1V9V | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	114
structure length	114
Chain Sequence	GSSGSSGPKATAQMEGRLQEFLTAYAPGARLALADGVLGFIHHQIVELARDCLAKSGENLVTSRYFLEMQEKLERLLQDAHERSDSEEVSFIVQLVRKLLIIISRPARSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 114 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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114 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Homo sapiens
publication title	Solution structure of putative domain of human KIAA0561 protein rcsb
molecule keywords	KIAA0561 protein
total genus	30
structure length	114
sequence length	114
ec nomenclature	ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date	2004-02-03

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1480.20	Mainly Alpha	Up-down Bundle	hypothetical protein mp506/mpn330, domain 1	MAST3 pre-PK domain-like	1v9vA01

2M9XA 1V9VA
chains in the Genus database with same CATH superfamily

1V9VA 4CQ4A 2JUAA 4GN0A 1P68A 1TD6A 3VJFA 4L3UA 2M9XA
chains in the Genus database with same CATH topology

2M9XA 1V9VA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2M9X A;  1V9V A; 
#chains in the Genus database with same CATH topology
 1V9V A;  4CQ4 A;  2JUA A;  4GN0 A;  1P68 A;  1TD6 A;  3VJF A;  4L3U A;  2M9X A; 
#chains in the Genus database with same CATH homology
 2M9X A;  1V9V A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1V9VA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN