The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
61
|
sequence length |
232
|
structure length |
223
|
Chain Sequence |
IPVKKVEYVFIELDKMPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVYTWYPAFGDVNVIERLKAEGLEVIEDEKAEEAEGEIAFALIGEKSFAIPGGLEEQKVSKVLDEMDQAEIELVYYGLKEDAKADMEKGEIDYVFIRAPTKEEVMELVKRGEVFSPTTRHVLPFIPDKIDVKLEDLF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
(NZ)CH...O contacts assist crystallization of a ParB-like nuclease.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Pyrococcus furiosus
|
| molecule keywords |
Conserved hypothetical protein
|
| total genus |
61
|
| structure length |
223
|
| sequence length |
232
|
| ec nomenclature | |
| pdb deposition date | 2004-04-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02195 | ParBc | ParB-like nuclease domain |
| A | PF18231 | DUF5603 | Domain of unknown function (DUF5603) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 | Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 | ||
| Alpha Beta | Alpha-Beta Complex | Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain |
#chains in the Genus database with same CATH superfamily 1YZS A; 2RII X; 2HWJ A; 3HY2 X; 2B6F A; 1XW4 X; 1VK1 A; 1XW3 A; 3CYI A; #chains in the Genus database with same CATH topology 1WKV A; 3VSC A; 3VSD A; 1YZS A; 2RII X; 5B3A A; 2HWJ A; 3HY2 X; 1XW4 X; 2B6F A; 1VK1 A; 3VSA A; 1XW3 A; 3CYI A; 1VZ0 A; 5B36 A; #chains in the Genus database with same CATH homology 1WKV A; 3VSC A; 3VSD A; 1YZS A; 2RII X; 5B3A A; 2HWJ A; 3HY2 X; 1XW4 X; 2B6F A; 1VK1 A; 3VSA A; 1XW3 A; 3CYI A; 1VZ0 A; 5B36 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
