The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
113
|
structure length |
113
|
Chain Sequence |
MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Escherichia coli
|
| molecule keywords |
Hypothetical UPF0131 protein ytfP
|
| total genus |
22
|
| structure length |
113
|
| sequence length |
113
|
| ec nomenclature | |
| pdb deposition date | 2004-09-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06094 | GGACT | Gamma-glutamyl cyclotransferase, AIG2-like |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Hypothetical upf0131 protein ytfp | Gamma-glutamyl cyclotransferase-like |
#chains in the Genus database with same CATH superfamily 1XHS A; 2G0Q A; 2Q53 A; 2PN7 A; 4ISS A; 3JUB A; 2RBH A; 2KL2 A; 4IST A; 5C5Z A; 1VKB A; 2QIK A; 3CRY A; 2I5T A; 2JQV A; 3JUD A; 1V30 A; 3JUC A; #chains in the Genus database with same CATH topology 4IST A; 2RBH A; 2KL2 A; 2XVO A; 1XHS A; 2G0Q A; 5C5Z A; 2QIK A; 2JQV A; 3JUD A; 1V30 A; 2Q53 A; 3JUB A; 3VKH A; 2I5T A; 3JUC A; 4ISS A; 2PN7 A; 3VKG A; 1VKB A; 3CRY A; #chains in the Genus database with same CATH homology 1XHS A; 2G0Q A; 2Q53 A; 2PN7 A; 4ISS A; 3JUB A; 2RBH A; 2KL2 A; 4IST A; 5C5Z A; 1VKB A; 2QIK A; 3CRY A; 2I5T A; 2JQV A; 3JUD A; 1V30 A; 3JUC A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
