The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
78
|
sequence length |
277
|
structure length |
269
|
Chain Sequence |
MNSLLFVYGTLRKHEKNHHLLAQSACINEQARTKGSLFAAGPTVVFNDEDEGYIYGEVYEADELCIHKLDQFFQGYHKQTVFVETDVGIKIALIYFMNFTKISSGDWKEHQMISKSKNPIYYFAYGSCMDNARFQKAGVDHYFQDPVGRAVLKGYTTRFTLKREDGSRADMLEDGGTTEGVLYRIPYSALSYLYKREGVESLTYRPAFVDVEAGGRHYKDCLTFLVLQKEAEIAPPQHYQIEIERGAELYLSPEFTEKLKRHMNSLPKG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
UPF0131 protein ykqA
|
| publication title |
Crystal structure of YkqA from Bacillus subtilis.
rcsb |
| source organism |
Bacillus subtilis
|
| total genus |
78
|
| structure length |
269
|
| sequence length |
277
|
| ec nomenclature | |
| pdb deposition date | 2007-07-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06094 | GGACT | Gamma-glutamyl cyclotransferase, AIG2-like |
| A | PF13772 | AIG2_2 | AIG2-like family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Hypothetical upf0131 protein ytfp | Gamma-glutamyl cyclotransferase-like | ||
| Alpha Beta | Roll | Hypothetical upf0131 protein ytfp | Gamma-glutamyl cyclotransferase-like |
#chains in the Genus database with same CATH superfamily 3JUC A; 4ISS A; 2PN7 A; 4IST A; 2G0Q A; 2QIK A; 5C5Z A; 3JUB A; 3JUD A; 2I5T A; 2KL2 A; 1XHS A; 1VKB A; 3CRY A; 2Q53 A; 2JQV A; 1V30 A; 2RBH A; #chains in the Genus database with same CATH topology 4ISS A; 2G0Q A; 3JUB A; 2PN7 A; 2Q53 A; 2JQV A; 2RBH A; 4IST A; 3JUD A; 3CRY A; 5C5Z A; 2XVO A; 3VKG A; 3JUC A; 2KL2 A; 1V30 A; 2QIK A; 2I5T A; 1XHS A; 1VKB A; 3VKH A; #chains in the Genus database with same CATH homology 3JUC A; 4ISS A; 2PN7 A; 4IST A; 2G0Q A; 2QIK A; 5C5Z A; 3JUB A; 3JUD A; 2I5T A; 2KL2 A; 1XHS A; 1VKB A; 3CRY A; 2Q53 A; 2JQV A; 1V30 A; 2RBH A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
