The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
30
|
sequence length |
175
|
structure length |
175
|
Chain Sequence |
AVTVDTICKNGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTFDKEKNVCLGP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Cell adhesion
|
| molecule keywords |
ookinete surface protein Pvs25
|
| publication title |
The essential mosquito-stage P25 and P28 proteins from Plasmodium form tile-like triangular prisms
pubmed doi rcsb |
| source organism |
Plasmodium vivax
|
| total genus |
30
|
| structure length |
175
|
| sequence length |
175
|
| ec nomenclature | |
| pdb deposition date | 2005-03-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06247 | Plasmod_Pvs28 | Pvs28 EGF domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Orthogonal Prism | Plasmodium vivax P25 fold | Plasmodium vivax P25 domain |
#chains in the Genus database with same CATH superfamily 1Z1Y A; 1Z27 A; 1Z3G A; #chains in the Genus database with same CATH topology 1Z1Y A; 1Z27 A; 1Z3G A; #chains in the Genus database with same CATH homology 1Z1Y A; 1Z27 A; 1Z3G A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
