1LSHB

Lipid-protein interactions in lipovitellin
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
174
structure length
174
Chain Sequence
SKPKVVIVLRAVRADGKQQGLQTTLYYGLTSNGLPKAKIVAVELSDLSVWKLCAKFRLSAHMKAKAAIGWGKNCQQYRAMLEASTGNLQSHPAARVDIKWGRLPSSLQRAKNALLENGAPVIASKLEMEIMPKANQKHQVSVILAAMTPRRMNIIVKLPKVTYFQQGILLPFTF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Lipid-protein interactions in lipovitellin.
pubmed doi rcsb
molecule tags Lipid binding protein
molecule keywords LIPOVITELLIN (LV-1N, LV-1C)
total genus 32
structure length 174
sequence length 174
ec nomenclature
pdb deposition date 2002-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF09175 DUF1944 Domain of unknown function (DUF1944)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.90.10 Mainly Beta Single Sheet Lipovitellin-phosvitin complex; beta-sheet shell regions Vitellinogen, beta-sheet shell domain 1lshB00
1LSHB
chains in the Genus database with same CATH superfamily
1LSHA 1LSHB
chains in the Genus database with same CATH topology
1LSHB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LSH B; 
#chains in the Genus database with same CATH topology
 1LSH A;  1LSH B; 
#chains in the Genus database with same CATH homology
 1LSH B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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