1XNQN

Structure of an inosine-adenine wobble base pair complex in the context of the decoding center
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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connected with : NaN
molecule tags Ribosome
publication title Structure of a purine-purine wobble base pair in the decoding center of the ribosome.
pubmed doi rcsb
molecule keywords 16S ribosomal RNA
total genus 7
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2004-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 1xnqN00
4JI1N 4DV4N 2E5LN 3J7AT 4DR3N 4JI4N 4NXMN 2HHHN 2ZM6N 4LF7N 4DV1N 5FLXd 4DR4N 3J81d 1N36N 3T1HN 4JI5N 4LFBN 4LF9N 4B3RN 1XMON 5A2Qd 4DV5N 4DR2N 5BR8N 4DV7N 1XNRN 4DV2N 1N33N 1XNQN 4LFCN 1I94N 3OTON 5LMNN 2UUAN 4LF5N 2F4VN 4JV5N 4JI2N 3J80d 1HNZN 1HR0N 4DUZN 4DR7N 4DR1N 1IBKN 1N32N 4DR5N 4JI3N 4X65N 1IBMN 1N34N 4GKKN 1HNXN 2UUBN 4B3MN 4LFAN 4LF4N 5LMUN 4JI8N 4B3TN 5IWAN 1HNWN 4X66N 4NXNN 4B3SN 4GKJN 4JI7N 4LF8N 4DV0N 4DV3N 1FJGN 5IT9d 2UXCN 4OX9N 4JI0N 4K0KN 4DR6N 4X64N 4X62N 2UU9N 2UXDN 4DV6N 2VQFN 1XMQN 4JYAN 3JAMd 2VQEN 4LF6N 1IBLN 2UXBN 4AQYN 4JI6N 1J5EN 4KHPN 3T1YN 4DUYN 2UUCN 4YHHN 4YY3N
chains in the Genus database with same CATH superfamily
4JI1N 4DV4N 2E5LN 3J7AT 4DR3N 4JI4N 4NXMN 2HHHN 2ZM6N 4LF7N 4DV1N 5FLXd 4DR4N 3J81d 1N36N 3T1HN 4JI5N 4LFBN 4LF9N 4B3RN 1XMON 5A2Qd 4DV5N 4DR2N 5BR8N 4DV7N 1XNRN 4DV2N 1N33N 1XNQN 4LFCN 1I94N 3OTON 5LMNN 2UUAN 4LF5N 2F4VN 4JV5N 4JI2N 3J80d 1HNZN 1HR0N 4DUZN 4DR7N 4DR1N 1IBKN 1N32N 4DR5N 4JI3N 4X65N 1IBMN 1N34N 4GKKN 1HNXN 2UUBN 4B3MN 4LFAN 4LF4N 5LMUN 4JI8N 4B3TN 5IWAN 1HNWN 4X66N 4NXNN 4B3SN 4GKJN 4JI7N 4LF8N 4DV0N 4DV3N 1FJGN 5IT9d 2UXCN 4OX9N 4JI0N 4K0KN 4DR6N 4X64N 4X62N 2UU9N 2UXDN 4DV6N 2VQFN 1XMQN 4JYAN 3JAMd 2VQEN 4LF6N 1IBLN 2UXBN 4AQYN 4JI6N 1J5EN 4KHPN 3T1YN 4DUYN 2UUCN 4YHHN 4YY3N
chains in the Genus database with same CATH topology
4JI1N 4DV4N 2E5LN 3J7AT 4DR3N 4JI4N 4NXMN 2HHHN 2ZM6N 4LF7N 4DV1N 5FLXd 4DR4N 3J81d 1N36N 3T1HN 4JI5N 4LFBN 4LF9N 4B3RN 1XMON 5A2Qd 4DV5N 4DR2N 5BR8N 4DV7N 1XNRN 4DV2N 1N33N 1XNQN 4LFCN 1I94N 3OTON 5LMNN 2UUAN 4LF5N 2F4VN 4JV5N 4JI2N 3J80d 1HNZN 1HR0N 4DUZN 4DR7N 4DR1N 1IBKN 1N32N 4DR5N 4JI3N 4X65N 1IBMN 1N34N 4GKKN 1HNXN 2UUBN 4B3MN 4LFAN 4LF4N 5LMUN 4JI8N 4B3TN 5IWAN 1HNWN 4X66N 4NXNN 4B3SN 4GKJN 4JI7N 4LF8N 4DV0N 4DV3N 1FJGN 5IT9d 2UXCN 4OX9N 4JI0N 4K0KN 4DR6N 4X64N 4X62N 2UU9N 2UXDN 4DV6N 2VQFN 1XMQN 4JYAN 3JAMd 2VQEN 4LF6N 1IBLN 2UXBN 4AQYN 4JI6N 1J5EN 4KHPN 3T1YN 4DUYN 2UUCN 4YHHN 4YY3N
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4JI1 N;  4DV4 N;  2E5L N;  3J7A T;  4DR3 N;  4JI4 N;  4NXM N;  2HHH N;  2ZM6 N;  4LF7 N;  4DV1 N;  5FLX d;  4DR4 N;  3J81 d;  1N36 N;  3T1H N;  4JI5 N;  4LFB N;  4LF9 N;  4B3R N;  1XMO N;  5A2Q d;  4DV5 N;  4DR2 N;  5BR8 N;  4DV7 N;  1XNR N;  4DV2 N;  1N33 N;  1XNQ N;  4LFC N;  1I94 N;  3OTO N;  5LMN N;  2UUA N;  4LF5 N;  2F4V N;  4JV5 N;  4JI2 N;  3J80 d;  1HNZ N;  1HR0 N;  4DUZ N;  4DR7 N;  4DR1 N;  1IBK N;  1N32 N;  4DR5 N;  4JI3 N;  4X65 N;  1IBM N;  1N34 N;  4GKK N;  1HNX N;  2UUB N;  4B3M N;  4LFA N;  4LF4 N;  5LMU N;  4JI8 N;  4B3T N;  5IWA N;  1HNW N;  4X66 N;  4NXN N;  4B3S N;  4GKJ N;  4JI7 N;  4LF8 N;  4DV0 N;  4DV3 N;  1FJG N;  5IT9 d;  2UXC N;  4OX9 N;  4JI0 N;  4K0K N;  4DR6 N;  4X64 N;  4X62 N;  2UU9 N;  2UXD N;  4DV6 N;  2VQF N;  1XMQ N;  4JYA N;  3JAM d;  2VQE N;  4LF6 N;  1IBL N;  2UXB N;  4AQY N;  4JI6 N;  1J5E N;  4KHP N;  3T1Y N;  4DUY N;  2UUC N;  4YHH N;  4YY3 N; 
#chains in the Genus database with same CATH topology
 4JI1 N;  4DV4 N;  2E5L N;  3J7A T;  4DR3 N;  4JI4 N;  4NXM N;  2HHH N;  2ZM6 N;  4LF7 N;  4DV1 N;  5FLX d;  4DR4 N;  3J81 d;  1N36 N;  3T1H N;  4JI5 N;  4LFB N;  4LF9 N;  4B3R N;  1XMO N;  5A2Q d;  4DV5 N;  4DR2 N;  5BR8 N;  4DV7 N;  1XNR N;  4DV2 N;  1N33 N;  1XNQ N;  4LFC N;  1I94 N;  3OTO N;  5LMN N;  2UUA N;  4LF5 N;  2F4V N;  4JV5 N;  4JI2 N;  3J80 d;  1HNZ N;  1HR0 N;  4DUZ N;  4DR7 N;  4DR1 N;  1IBK N;  1N32 N;  4DR5 N;  4JI3 N;  4X65 N;  1IBM N;  1N34 N;  4GKK N;  1HNX N;  2UUB N;  4B3M N;  4LFA N;  4LF4 N;  5LMU N;  4JI8 N;  4B3T N;  5IWA N;  1HNW N;  4X66 N;  4NXN N;  4B3S N;  4GKJ N;  4JI7 N;  4LF8 N;  4DV0 N;  4DV3 N;  1FJG N;  5IT9 d;  2UXC N;  4OX9 N;  4JI0 N;  4K0K N;  4DR6 N;  4X64 N;  4X62 N;  2UU9 N;  2UXD N;  4DV6 N;  2VQF N;  1XMQ N;  4JYA N;  3JAM d;  2VQE N;  4LF6 N;  1IBL N;  2UXB N;  4AQY N;  4JI6 N;  1J5E N;  4KHP N;  3T1Y N;  4DUY N;  2UUC N;  4YHH N;  4YY3 N; 
#chains in the Genus database with same CATH homology
 4JI1 N;  4DV4 N;  2E5L N;  3J7A T;  4DR3 N;  4JI4 N;  4NXM N;  2HHH N;  2ZM6 N;  4LF7 N;  4DV1 N;  5FLX d;  4DR4 N;  3J81 d;  1N36 N;  3T1H N;  4JI5 N;  4LFB N;  4LF9 N;  4B3R N;  1XMO N;  5A2Q d;  4DV5 N;  4DR2 N;  5BR8 N;  4DV7 N;  1XNR N;  4DV2 N;  1N33 N;  1XNQ N;  4LFC N;  1I94 N;  3OTO N;  5LMN N;  2UUA N;  4LF5 N;  2F4V N;  4JV5 N;  4JI2 N;  3J80 d;  1HNZ N;  1HR0 N;  4DUZ N;  4DR7 N;  4DR1 N;  1IBK N;  1N32 N;  4DR5 N;  4JI3 N;  4X65 N;  1IBM N;  1N34 N;  4GKK N;  1HNX N;  2UUB N;  4B3M N;  4LFA N;  4LF4 N;  5LMU N;  4JI8 N;  4B3T N;  5IWA N;  1HNW N;  4X66 N;  4NXN N;  4B3S N;  4GKJ N;  4JI7 N;  4LF8 N;  4DV0 N;  4DV3 N;  1FJG N;  5IT9 d;  2UXC N;  4OX9 N;  4JI0 N;  4K0K N;  4DR6 N;  4X64 N;  4X62 N;  2UU9 N;  2UXD N;  4DV6 N;  2VQF N;  1XMQ N;  4JYA N;  3JAM d;  2VQE N;  4LF6 N;  1IBL N;  2UXB N;  4AQY N;  4JI6 N;  1J5E N;  4KHP N;  3T1Y N;  4DUY N;  2UUC N;  4YHH N;  4YY3 N;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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