4JI7N

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S rRNA
publication title The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
pubmed doi rcsb
total genus 11
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2013-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4ji7N00
4DR1N 4GKKN 4K0KN 4DV4N 1J5EN 2UUBN 4LF7N 1FJGN 4X65N 4NXNN 4YY3N 4JI3N 4LF5N 4LF8N 5A2Qd 4GKJN 4DV5N 1XNQN 1N33N 1IBMN 5IT9d 4JI1N 4B3SN 2F4VN 4JI0N 3T1HN 2UXCN 4DUZN 4AQYN 4JV5N 4YHHN 4DV0N 1XMON 1XNRN 1IBKN 1N32N 4DV3N 4JI4N 3J80d 4DV1N 1N34N 3JAMd 4NXMN 4JI8N 4B3TN 4LFCN 4JI7N 4DV7N 1XMQN 2VQEN 4X64N 1IBLN 2HHHN 4B3RN 3T1YN 4JI2N 1HR0N 4KHPN 5IWAN 4DUYN 2UU9N 1HNXN 4DR2N 4JI5N 4DR6N 5LMUN 3J7AT 2UXDN 4B3MN 2UUAN 4DR5N 5BR8N 5LMNN 4X62N 4LF4N 4LF6N 1HNZN 4DR3N 4LFAN 3OTON 2UUCN 1I94N 4X66N 4DR4N 1HNWN 4DV2N 5FLXd 4LF9N 4DV6N 4JI6N 3J81d 1N36N 4DR7N 2UXBN 4JYAN 4LFBN 2E5LN 4OX9N 2ZM6N 2VQFN
chains in the Genus database with same CATH superfamily
4DR1N 4GKKN 4K0KN 4DV4N 1J5EN 2UUBN 4LF7N 1FJGN 4X65N 4NXNN 4YY3N 4JI3N 4LF5N 4LF8N 5A2Qd 4GKJN 4DV5N 1XNQN 1N33N 1IBMN 5IT9d 4JI1N 4B3SN 2F4VN 4JI0N 3T1HN 2UXCN 4DUZN 4AQYN 4JV5N 4YHHN 4DV0N 1XMON 1XNRN 1IBKN 1N32N 4DV3N 4JI4N 3J80d 4DV1N 1N34N 3JAMd 4NXMN 4JI8N 4B3TN 4LFCN 4JI7N 4DV7N 1XMQN 2VQEN 4X64N 1IBLN 2HHHN 4B3RN 3T1YN 4JI2N 1HR0N 4KHPN 5IWAN 4DUYN 2UU9N 1HNXN 4DR2N 4JI5N 4DR6N 5LMUN 3J7AT 2UXDN 4B3MN 2UUAN 4DR5N 5BR8N 5LMNN 4X62N 4LF4N 4LF6N 1HNZN 4DR3N 4LFAN 3OTON 2UUCN 1I94N 4X66N 4DR4N 1HNWN 4DV2N 5FLXd 4LF9N 4DV6N 4JI6N 3J81d 1N36N 4DR7N 2UXBN 4JYAN 4LFBN 2E5LN 4OX9N 2ZM6N 2VQFN
chains in the Genus database with same CATH topology
4DR1N 4GKKN 4K0KN 4DV4N 1J5EN 2UUBN 4LF7N 1FJGN 4X65N 4NXNN 4YY3N 4JI3N 4LF5N 4LF8N 5A2Qd 4GKJN 4DV5N 1XNQN 1N33N 1IBMN 5IT9d 4JI1N 4B3SN 2F4VN 4JI0N 3T1HN 2UXCN 4DUZN 4AQYN 4JV5N 4YHHN 4DV0N 1XMON 1XNRN 1IBKN 1N32N 4DV3N 4JI4N 3J80d 4DV1N 1N34N 3JAMd 4NXMN 4JI8N 4B3TN 4LFCN 4JI7N 4DV7N 1XMQN 2VQEN 4X64N 1IBLN 2HHHN 4B3RN 3T1YN 4JI2N 1HR0N 4KHPN 5IWAN 4DUYN 2UU9N 1HNXN 4DR2N 4JI5N 4DR6N 5LMUN 3J7AT 2UXDN 4B3MN 2UUAN 4DR5N 5BR8N 5LMNN 4X62N 4LF4N 4LF6N 1HNZN 4DR3N 4LFAN 3OTON 2UUCN 1I94N 4X66N 4DR4N 1HNWN 4DV2N 5FLXd 4LF9N 4DV6N 4JI6N 3J81d 1N36N 4DR7N 2UXBN 4JYAN 4LFBN 2E5LN 4OX9N 2ZM6N 2VQFN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DR1 N;  4GKK N;  4K0K N;  4DV4 N;  1J5E N;  2UUB N;  4LF7 N;  1FJG N;  4X65 N;  4NXN N;  4YY3 N;  4JI3 N;  4LF5 N;  4LF8 N;  5A2Q d;  4GKJ N;  4DV5 N;  1XNQ N;  1N33 N;  1IBM N;  5IT9 d;  4JI1 N;  4B3S N;  2F4V N;  4JI0 N;  3T1H N;  2UXC N;  4DUZ N;  4AQY N;  4JV5 N;  4YHH N;  4DV0 N;  1XMO N;  1XNR N;  1IBK N;  1N32 N;  4DV3 N;  4JI4 N;  3J80 d;  4DV1 N;  1N34 N;  3JAM d;  4NXM N;  4JI8 N;  4B3T N;  4LFC N;  4JI7 N;  4DV7 N;  1XMQ N;  2VQE N;  4X64 N;  1IBL N;  2HHH N;  4B3R N;  3T1Y N;  4JI2 N;  1HR0 N;  4KHP N;  5IWA N;  4DUY N;  2UU9 N;  1HNX N;  4DR2 N;  4JI5 N;  4DR6 N;  5LMU N;  3J7A T;  2UXD N;  4B3M N;  2UUA N;  4DR5 N;  5BR8 N;  5LMN N;  4X62 N;  4LF4 N;  4LF6 N;  1HNZ N;  4DR3 N;  4LFA N;  3OTO N;  2UUC N;  1I94 N;  4X66 N;  4DR4 N;  1HNW N;  4DV2 N;  5FLX d;  4LF9 N;  4DV6 N;  4JI6 N;  3J81 d;  1N36 N;  4DR7 N;  2UXB N;  4JYA N;  4LFB N;  2E5L N;  4OX9 N;  2ZM6 N;  2VQF N; 
#chains in the Genus database with same CATH topology
 4DR1 N;  4GKK N;  4K0K N;  4DV4 N;  1J5E N;  2UUB N;  4LF7 N;  1FJG N;  4X65 N;  4NXN N;  4YY3 N;  4JI3 N;  4LF5 N;  4LF8 N;  5A2Q d;  4GKJ N;  4DV5 N;  1XNQ N;  1N33 N;  1IBM N;  5IT9 d;  4JI1 N;  4B3S N;  2F4V N;  4JI0 N;  3T1H N;  2UXC N;  4DUZ N;  4AQY N;  4JV5 N;  4YHH N;  4DV0 N;  1XMO N;  1XNR N;  1IBK N;  1N32 N;  4DV3 N;  4JI4 N;  3J80 d;  4DV1 N;  1N34 N;  3JAM d;  4NXM N;  4JI8 N;  4B3T N;  4LFC N;  4JI7 N;  4DV7 N;  1XMQ N;  2VQE N;  4X64 N;  1IBL N;  2HHH N;  4B3R N;  3T1Y N;  4JI2 N;  1HR0 N;  4KHP N;  5IWA N;  4DUY N;  2UU9 N;  1HNX N;  4DR2 N;  4JI5 N;  4DR6 N;  5LMU N;  3J7A T;  2UXD N;  4B3M N;  2UUA N;  4DR5 N;  5BR8 N;  5LMN N;  4X62 N;  4LF4 N;  4LF6 N;  1HNZ N;  4DR3 N;  4LFA N;  3OTO N;  2UUC N;  1I94 N;  4X66 N;  4DR4 N;  1HNW N;  4DV2 N;  5FLX d;  4LF9 N;  4DV6 N;  4JI6 N;  3J81 d;  1N36 N;  4DR7 N;  2UXB N;  4JYA N;  4LFB N;  2E5L N;  4OX9 N;  2ZM6 N;  2VQF N; 
#chains in the Genus database with same CATH homology
 4DR1 N;  4GKK N;  4K0K N;  4DV4 N;  1J5E N;  2UUB N;  4LF7 N;  1FJG N;  4X65 N;  4NXN N;  4YY3 N;  4JI3 N;  4LF5 N;  4LF8 N;  5A2Q d;  4GKJ N;  4DV5 N;  1XNQ N;  1N33 N;  1IBM N;  5IT9 d;  4JI1 N;  4B3S N;  2F4V N;  4JI0 N;  3T1H N;  2UXC N;  4DUZ N;  4AQY N;  4JV5 N;  4YHH N;  4DV0 N;  1XMO N;  1XNR N;  1IBK N;  1N32 N;  4DV3 N;  4JI4 N;  3J80 d;  4DV1 N;  1N34 N;  3JAM d;  4NXM N;  4JI8 N;  4B3T N;  4LFC N;  4JI7 N;  4DV7 N;  1XMQ N;  2VQE N;  4X64 N;  1IBL N;  2HHH N;  4B3R N;  3T1Y N;  4JI2 N;  1HR0 N;  4KHP N;  5IWA N;  4DUY N;  2UU9 N;  1HNX N;  4DR2 N;  4JI5 N;  4DR6 N;  5LMU N;  3J7A T;  2UXD N;  4B3M N;  2UUA N;  4DR5 N;  5BR8 N;  5LMN N;  4X62 N;  4LF4 N;  4LF6 N;  1HNZ N;  4DR3 N;  4LFA N;  3OTO N;  2UUC N;  1I94 N;  4X66 N;  4DR4 N;  1HNW N;  4DV2 N;  5FLX d;  4LF9 N;  4DV6 N;  4JI6 N;  3J81 d;  1N36 N;  4DR7 N;  2UXB N;  4JYA N;  4LFB N;  2E5L N;  4OX9 N;  2ZM6 N;  2VQF N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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