The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
293
|
sequence length |
888
|
structure length |
888
|
Chain Sequence |
SNPFAHLAEPLDPVQPGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMAK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of human iron regulatory protein 1 as cytosolic aconitase
pubmed doi rcsb |
| molecule tags |
Lyase
|
| source organism |
Homo sapiens
|
| molecule keywords |
Iron-responsive element binding protein 1
|
| total genus |
293
|
| structure length |
888
|
| sequence length |
888
|
| ec nomenclature |
ec
4.2.1.3: Aconitate hydratase. |
| pdb deposition date | 2005-09-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00330 | Aconitase | Aconitase family (aconitate hydratase) |
| A | PF00694 | Aconitase_C | Aconitase C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Apolipoprotein Cii; Chain: A; | Apolipoprotein Cii; Chain: A; | ||
| Alpha Beta | Alpha-Beta Barrel | Aconitase; domain 4 | Aconitase, domain 4 | ||
| Alpha Beta | 2-Layer Sandwich | Aconitase; domain 3 | Aconitase, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | Aconitase; domain 3 | Aconitase, domain 3 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Aconitase; Domain 2 | Aconitase, Domain 2 |
#chains in the Genus database with same CATH superfamily 3H5J A; 2PKP A; 1B0M A; 4KP1 A; 2HCU A; 1B0J A; 3VBA A; 1V7L A; 2B3Y A; 1AMJ A; 5ACN A; 3SN2 A; 8ACN A; 1AMI A; 3H5E A; 1NIS A; 1FGH A; 7ACN A; 1NIT A; 4NQY A; 1L5J A; 1ACO A; 3H5H A; 3Q3W A; 1C97 A; 6ACN A; 3SNP A; 1C96 A; 2B3X A; 1B0K A; 4KP2 A; #chains in the Genus database with same CATH topology 3H5J A; 1SOH A; 2PKP A; 1B0M A; 4KP1 A; 1B0J A; 2HCU A; 3VBA A; 1V7L A; 2B3Y A; 1AMJ A; 5ACN A; 3SN2 A; 8ACN A; 1AMI A; 3H5E A; 1NIS A; 1I5J A; 1FGH A; 7ACN A; 1NIT A; 4NQY A; 1L5J A; 1ACO A; 3H5H A; 3Q3W A; 1C97 A; 6ACN A; 3SNP A; 1C96 A; 2B3X A; 1B0K A; 4KP2 A; 1O8T A; #chains in the Genus database with same CATH homology 3H5J A; 1SOH A; 2PKP A; 1B0M A; 4KP1 A; 1B0J A; 2HCU A; 3VBA A; 1V7L A; 2B3Y A; 1AMJ A; 5ACN A; 3SN2 A; 8ACN A; 1AMI A; 3H5E A; 1NIS A; 1I5J A; 1FGH A; 7ACN A; 1NIT A; 4NQY A; 1L5J A; 1ACO A; 3H5H A; 3Q3W A; 1C97 A; 6ACN A; 3SNP A; 1C96 A; 2B3X A; 1B0K A; 4KP2 A; 1O8T A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
