2BLUA

Thaumatin after a high dose x-ray "burn"
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
206
structure length
206
Chain Sequence
ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Plant protein
molecule keywords THAUMATIN I
publication title Improving Radiation-Damage Substructures for Rip.
pubmed doi rcsb
total genus 51
structure length 206
sequence length 206
ec nomenclature
pdb deposition date 2005-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00314 Thaumatin Thaumatin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.110.10 Mainly Beta Sandwich Thaumatin Thaumatin 2bluA00
2VU6A 4DJ1A 4EKAA 3ALDA 4EKTA 3N02A 3V84A 3ZEJA 4BARA 3AL7A 2VHRA 3DZRA 5KW7A 5AVGA 1RQWA 4AXUA 2D8OA 2VU7A 3X3TA 4L5HA 3E0AA 1Z3QA 5FGTA 2VI3A 4MBTA 3VCEA 5K7QA 5LH6A 4EL3A 2AHNA 1PCVA 4L2JA 5L4RA 5LN0A 3X3SA 3VCJA 4ZXRA 2VI1A 3VHFA 5JVXA 3VJQA 2WBZA 5KVWA 2VHKA 5KW8A 2G4YA 5KVXA 3G7MA 3X3RA 3VCGA 3GD0A 3ZS3A 2D8PA 5A47A 3QY5A 3VCHA 4BALA 3X3OA 3VCKA 5T3GA 2I0WA 2PE7A 4DIZA 3X3PA 4EK0A 4AXRA 5LH7A 3V87A 5LMHA 1LXZA 5KW0A 3DZPA 1PP3A 4DIYA 3WXSA 2VI4A 4ELAA 5LH1A 1LR3A 4TVTA 5AMZA 1LR2A 5FGXA 4XVBA 1LY0A 3V8AA 3V7VA 4EL2A 2OQNA 3WOUA 5KW3A 4JRUA 5KW5A 4EKHA 1THUA 3E3SA 1DU5A 4ZG3A 4EKOA 4DC6A 3VCIA 5KVZA 1THVA 1AUNA 5LH0A 5KW4A 3VHGA 4EKBA 3X3QA 4C3CA 2BLRA 4DC5A 5LH5A 4BCTA 4DJ0A 2BLUA 3V82A 2VI2A 4EL7A 3AOKA 3DZNA 1THWA 3GD9A 5LH3A 2A7IX 3V88A 3N03A
chains in the Genus database with same CATH superfamily
2VU6A 4DJ1A 4EKAA 3ALDA 4EKTA 3N02A 3V84A 3ZEJA 4BARA 3AL7A 2VHRA 3DZRA 5KW7A 5AVGA 1RQWA 4AXUA 2D8OA 2VU7A 3X3TA 4L5HA 3E0AA 1Z3QA 5FGTA 2VI3A 4MBTA 3VCEA 5K7QA 5LH6A 4EL3A 2AHNA 1PCVA 4L2JA 5L4RA 5LN0A 3X3SA 3VCJA 4ZXRA 2VI1A 3VHFA 5JVXA 3VJQA 2WBZA 5KVWA 2VHKA 5KW8A 2G4YA 5KVXA 3G7MA 3X3RA 3VCGA 3GD0A 3ZS3A 2D8PA 5A47A 3QY5A 3VCHA 4BALA 3X3OA 3VCKA 5T3GA 2I0WA 2PE7A 4DIZA 3X3PA 4EK0A 4AXRA 5LH7A 3V87A 5LMHA 1LXZA 5KW0A 3DZPA 1PP3A 4DIYA 3WXSA 2VI4A 4ELAA 5LH1A 1LR3A 4TVTA 5AMZA 1LR2A 5FGXA 4XVBA 1LY0A 3V8AA 3V7VA 4EL2A 2OQNA 3WOUA 5KW3A 4JRUA 5KW5A 4EKHA 1THUA 3E3SA 1DU5A 4ZG3A 4EKOA 4DC6A 3VCIA 5KVZA 1THVA 1AUNA 5LH0A 5KW4A 3VHGA 4EKBA 3X3QA 4C3CA 2BLRA 4DC5A 5LH5A 4BCTA 4DJ0A 2BLUA 3V82A 2VI2A 4EL7A 3AOKA 3DZNA 1THWA 3GD9A 5LH3A 2A7IX 3V88A 3N03A
chains in the Genus database with same CATH topology
2VU6A 4DJ1A 4EKAA 3ALDA 4EKTA 3N02A 3V84A 3ZEJA 4BARA 3AL7A 2VHRA 3DZRA 5KW7A 5AVGA 1RQWA 4AXUA 2D8OA 2VU7A 3X3TA 4L5HA 3E0AA 1Z3QA 5FGTA 2VI3A 4MBTA 3VCEA 5K7QA 5LH6A 4EL3A 2AHNA 1PCVA 4L2JA 5L4RA 5LN0A 3X3SA 3VCJA 4ZXRA 2VI1A 3VHFA 5JVXA 3VJQA 2WBZA 5KVWA 2VHKA 5KW8A 2G4YA 5KVXA 3G7MA 3X3RA 3VCGA 3GD0A 3ZS3A 2D8PA 5A47A 3QY5A 3VCHA 4BALA 3X3OA 3VCKA 5T3GA 2I0WA 2PE7A 4DIZA 3X3PA 4EK0A 4AXRA 5LH7A 3V87A 5LMHA 1LXZA 5KW0A 3DZPA 1PP3A 4DIYA 3WXSA 2VI4A 4ELAA 5LH1A 1LR3A 4TVTA 5AMZA 1LR2A 5FGXA 4XVBA 1LY0A 3V8AA 3V7VA 4EL2A 2OQNA 3WOUA 5KW3A 4JRUA 5KW5A 4EKHA 1THUA 3E3SA 1DU5A 4ZG3A 4EKOA 4DC6A 3VCIA 5KVZA 1THVA 1AUNA 5LH0A 5KW4A 3VHGA 4EKBA 3X3QA 4C3CA 2BLRA 4DC5A 5LH5A 4BCTA 4DJ0A 2BLUA 3V82A 2VI2A 4EL7A 3AOKA 3DZNA 1THWA 3GD9A 5LH3A 2A7IX 3V88A 3N03A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2VU6 A;  4DJ1 A;  4EKA A;  3ALD A;  4EKT A;  3N02 A;  3V84 A;  3ZEJ A;  4BAR A;  3AL7 A;  2VHR A;  3DZR A;  5KW7 A;  5AVG A;  1RQW A;  4AXU A;  2D8O A;  2VU7 A;  3X3T A;  4L5H A;  3E0A A;  1Z3Q A;  5FGT A;  2VI3 A;  4MBT A;  3VCE A;  5K7Q A;  5LH6 A;  4EL3 A;  2AHN A;  1PCV A;  4L2J A;  5L4R A;  5LN0 A;  3X3S A;  3VCJ A;  4ZXR A;  2VI1 A;  3VHF A;  5JVX A;  3VJQ A;  2WBZ A;  5KVW A;  2VHK A;  5KW8 A;  2G4Y A;  5KVX A;  3G7M A;  3X3R A;  3VCG A;  3GD0 A;  3ZS3 A;  2D8P A;  5A47 A;  3QY5 A;  3VCH A;  4BAL A;  3X3O A;  3VCK A;  5T3G A;  2I0W A;  2PE7 A;  4DIZ A;  3X3P A;  4EK0 A;  4AXR A;  5LH7 A;  3V87 A;  5LMH A;  1LXZ A;  5KW0 A;  3DZP A;  1PP3 A;  4DIY A;  3WXS A;  2VI4 A;  4ELA A;  5LH1 A;  1LR3 A;  4TVT A;  5AMZ A;  1LR2 A;  5FGX A;  4XVB A;  1LY0 A;  3V8A A;  3V7V A;  4EL2 A;  2OQN A;  3WOU A;  5KW3 A;  4JRU A;  5KW5 A;  4EKH A;  1THU A;  3E3S A;  1DU5 A;  4ZG3 A;  4EKO A;  4DC6 A;  3VCI A;  5KVZ A;  1THV A;  1AUN A;  5LH0 A;  5KW4 A;  3VHG A;  4EKB A;  3X3Q A;  4C3C A;  2BLR A;  4DC5 A;  5LH5 A;  4BCT A;  4DJ0 A;  2BLU A;  3V82 A;  2VI2 A;  4EL7 A;  3AOK A;  3DZN A;  1THW A;  3GD9 A;  5LH3 A;  2A7I X;  3V88 A;  3N03 A; 
#chains in the Genus database with same CATH topology
 2VU6 A;  4DJ1 A;  4EKA A;  3ALD A;  4EKT A;  3N02 A;  3V84 A;  3ZEJ A;  4BAR A;  3AL7 A;  2VHR A;  3DZR A;  5KW7 A;  5AVG A;  1RQW A;  4AXU A;  2D8O A;  2VU7 A;  3X3T A;  4L5H A;  3E0A A;  1Z3Q A;  5FGT A;  2VI3 A;  4MBT A;  3VCE A;  5K7Q A;  5LH6 A;  4EL3 A;  2AHN A;  1PCV A;  4L2J A;  5L4R A;  5LN0 A;  3X3S A;  3VCJ A;  4ZXR A;  2VI1 A;  3VHF A;  5JVX A;  3VJQ A;  2WBZ A;  5KVW A;  2VHK A;  5KW8 A;  2G4Y A;  5KVX A;  3G7M A;  3X3R A;  3VCG A;  3GD0 A;  3ZS3 A;  2D8P A;  5A47 A;  3QY5 A;  3VCH A;  4BAL A;  3X3O A;  3VCK A;  5T3G A;  2I0W A;  2PE7 A;  4DIZ A;  3X3P A;  4EK0 A;  4AXR A;  5LH7 A;  3V87 A;  5LMH A;  1LXZ A;  5KW0 A;  3DZP A;  1PP3 A;  4DIY A;  3WXS A;  2VI4 A;  4ELA A;  5LH1 A;  1LR3 A;  4TVT A;  5AMZ A;  1LR2 A;  5FGX A;  4XVB A;  1LY0 A;  3V8A A;  3V7V A;  4EL2 A;  2OQN A;  3WOU A;  5KW3 A;  4JRU A;  5KW5 A;  4EKH A;  1THU A;  3E3S A;  1DU5 A;  4ZG3 A;  4EKO A;  4DC6 A;  3VCI A;  5KVZ A;  1THV A;  1AUN A;  5LH0 A;  5KW4 A;  3VHG A;  4EKB A;  3X3Q A;  4C3C A;  2BLR A;  4DC5 A;  5LH5 A;  4BCT A;  4DJ0 A;  2BLU A;  3V82 A;  2VI2 A;  4EL7 A;  3AOK A;  3DZN A;  1THW A;  3GD9 A;  5LH3 A;  2A7I X;  3V88 A;  3N03 A; 
#chains in the Genus database with same CATH homology
 2VU6 A;  4DJ1 A;  4EKA A;  3ALD A;  4EKT A;  3N02 A;  3V84 A;  3ZEJ A;  4BAR A;  3AL7 A;  2VHR A;  3DZR A;  5KW7 A;  5AVG A;  1RQW A;  4AXU A;  2D8O A;  2VU7 A;  3X3T A;  4L5H A;  3E0A A;  1Z3Q A;  5FGT A;  2VI3 A;  4MBT A;  3VCE A;  5K7Q A;  5LH6 A;  4EL3 A;  2AHN A;  1PCV A;  4L2J A;  5L4R A;  5LN0 A;  3X3S A;  3VCJ A;  4ZXR A;  2VI1 A;  3VHF A;  5JVX A;  3VJQ A;  2WBZ A;  5KVW A;  2VHK A;  5KW8 A;  2G4Y A;  5KVX A;  3G7M A;  3X3R A;  3VCG A;  3GD0 A;  3ZS3 A;  2D8P A;  5A47 A;  3QY5 A;  3VCH A;  4BAL A;  3X3O A;  3VCK A;  5T3G A;  2I0W A;  2PE7 A;  4DIZ A;  3X3P A;  4EK0 A;  4AXR A;  5LH7 A;  3V87 A;  5LMH A;  1LXZ A;  5KW0 A;  3DZP A;  1PP3 A;  4DIY A;  3WXS A;  2VI4 A;  4ELA A;  5LH1 A;  1LR3 A;  4TVT A;  5AMZ A;  1LR2 A;  5FGX A;  4XVB A;  1LY0 A;  3V8A A;  3V7V A;  4EL2 A;  2OQN A;  3WOU A;  5KW3 A;  4JRU A;  5KW5 A;  4EKH A;  1THU A;  3E3S A;  1DU5 A;  4ZG3 A;  4EKO A;  4DC6 A;  3VCI A;  5KVZ A;  1THV A;  1AUN A;  5LH0 A;  5KW4 A;  3VHG A;  4EKB A;  3X3Q A;  4C3C A;  2BLR A;  4DC5 A;  5LH5 A;  4BCT A;  4DJ0 A;  2BLU A;  3V82 A;  2VI2 A;  4EL7 A;  3AOK A;  3DZN A;  1THW A;  3GD9 A;  5LH3 A;  2A7I X;  3V88 A;  3N03 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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