The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
127
|
sequence length |
326
|
structure length |
317
|
Chain Sequence |
DAIADASKRFSDATYPIAEKFDWGGSSAIAKYIADASAGNPRQAALAVEKLLEVGLTMDPKLVRAAVEAHSKALDSAKKNAKLMASKEDFAAVNEALARMIASADKQKFAALRTAFPESRELQGKLFAGNNAFEAEKAYDSFKALTSAVRDASINGAKAPVIAEDGPVGRAAKKFSEATYPIMDKLDWGKSPEISKYIETASAKNPKMMADGIDKTLEVALTMNQNAINDAVFAHVRAIKGALNTPGLVAERDDFARVNLALAKMIATADPAKFKALLTAFPGNADLQMALFAANNPEQAKAAYETFVALTSAVASS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Photosynthesis
|
| molecule keywords |
PERIDININ-CHLOROPHYLL A PROTEIN
|
| publication title |
X-Ray Structure of the High-Salt Form of the Peridinin-Chlorophyll A-Protein from the Dinoflagellate Amphidinium Carterae: Modulation of the Spectral Properties of Pigments by the Protein Environment.
pubmed doi rcsb |
| total genus |
127
|
| structure length |
317
|
| sequence length |
326
|
| ec nomenclature | |
| pdb deposition date | 2005-12-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02429 | PCP | Peridinin-chlorophyll A binding protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Alpha solenoid | Peridinin-chlorophyll Protein, Chain M | Peridinin-chlorophyll A binding |
#chains in the Genus database with same CATH superfamily 2X20 M; 2X1Z M; 2X21 M; 3IIS M; 1PPR M; 2C9E A; 3IIU M; #chains in the Genus database with same CATH topology 2X20 M; 2X1Z M; 2X21 M; 3IIS M; 1PPR M; 2C9E A; 3IIU M; #chains in the Genus database with same CATH homology 2X20 M; 2X1Z M; 2X21 M; 3IIS M; 1PPR M; 2C9E A; 3IIU M;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
