2DS8 | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	43
structure length	43
Chain Sequence	GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 43 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Metal binding protein, protein binding
source organism	Escherichia coli
publication title	Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX. pubmed doi rcsb
molecule keywords	ATP-dependent Clp protease ATP-binding subunit clpX
total genus	9
structure length	43
sequence length	43
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-06-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF06689	zf-C4_ClpX	ClpX C4-type zinc finger

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.30	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1; Chain A	2ds8A00

2DS5A 2DS6A 2DS8A
chains in the Genus database with same CATH superfamily

3G9MA 3FYLA 5E69A 2M9WA 4CN3A 6GATA 1GLUA 3DFXA 1GDCA 3VEKC 3DZYA 5GATA 2VUTI 1LO1A 3DZUD 3G9OA 5E6DA 4HCAA 3CBBA 3G6TA 3G6QA 1R0OB 3E00A 1A6YA 2KAEA 4OV7A 5EMPA 1R0NA 4IQRA 4HC7A 4CN2C 4TNTA 2GATA 4GATA 2C7AA 4OORA 5E6CA 5CBZA 1R4OA 2DS8A 1LATA 1HCPA 1GATA 3G8UA 2VUSI 5CC1A 5CC0A 3G99A 1DSZB 3E00D 1HRAA 7GATA 3G27A 5EMQA 3GATA 1R4RA 2A66A 1R0OA 1RGDA 1YNWB 4CN3D 5CBYA 5CBXA 5E6BA 2HANB 2HANA 3DZYD 3G9JA 2NLLB 3M9EA 1HLZA 4HN6A 4CN7A 3G97A 2GDAA 1DSZA 5KRBB 3VD6C 1LV3A 1KB6A 3DZUA 2VUUI 1YNWA 3DFVC 5L0MA 2FF0A 3G6PA 1KB2A 4OLNA 2ENVA 3G8XA 1GAUA 5EMCA 2NLLA 4CN5A 3G6RA 1KB4A 3G9PA 3G6UA 4TMAI 1RXRA 1BY4A 1R4IA 4HC9A 4NQAB 1HCQA 4ONDA 2EBLA 2DS6A 4HN5A 5E6AA 1GA5A 4AA6A 3G9IA 1GNFA 1CITA 2DS5A 1R0NB
chains in the Genus database with same CATH topology

2DS5A 2DS6A 2DS8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2DS5 A;  2DS6 A;  2DS8 A; 
#chains in the Genus database with same CATH topology
 3G9M A;  3FYL A;  5E69 A;  2M9W A;  4CN3 A;  6GAT A;  1GLU A;  3DFX A;  1GDC A;  3VEK C;  3DZY A;  5GAT A;  2VUT I;  1LO1 A;  3DZU D;  3G9O A;  5E6D A;  4HCA A;  3CBB A;  3G6T A;  3G6Q A;  1R0O B;  3E00 A;  1A6Y A;  2KAE A;  4OV7 A;  5EMP A;  1R0N A;  4IQR A;  4HC7 A;  4CN2 C;  4TNT A;  2GAT A;  4GAT A;  2C7A A;  4OOR A;  5E6C A;  5CBZ A;  1R4O A;  2DS8 A;  1LAT A;  1HCP A;  1GAT A;  3G8U A;  2VUS I;  5CC1 A;  5CC0 A;  3G99 A;  1DSZ B;  3E00 D;  1HRA A;  7GAT A;  3G27 A;  5EMQ A;  3GAT A;  1R4R A;  2A66 A;  1R0O A;  1RGD A;  1YNW B;  4CN3 D;  5CBY A;  5CBX A;  5E6B A;  2HAN B;  2HAN A;  3DZY D;  3G9J A;  2NLL B;  3M9E A;  1HLZ A;  4HN6 A;  4CN7 A;  3G97 A;  2GDA A;  1DSZ A;  5KRB B;  3VD6 C;  1LV3 A;  1KB6 A;  3DZU A;  2VUU I;  1YNW A;  3DFV C;  5L0M A;  2FF0 A;  3G6P A;  1KB2 A;  4OLN A;  2ENV A;  3G8X A;  1GAU A;  5EMC A;  2NLL A;  4CN5 A;  3G6R A;  1KB4 A;  3G9P A;  3G6U A;  4TMA I;  1RXR A;  1BY4 A;  1R4I A;  4HC9 A;  4NQA B;  1HCQ A;  4OND A;  2EBL A;  2DS6 A;  4HN5 A;  5E6A A;  1GA5 A;  4AA6 A;  3G9I A;  1GNF A;  1CIT A;  2DS5 A;  1R0N B; 
#chains in the Genus database with same CATH homology
 2DS5 A;  2DS6 A;  2DS8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2DS8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations