2EBLA

Solution structure of the zinc finger, c4-type domain of human coup transcription factor 1
Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
89
structure length
89
Chain Sequence
GSSGSSGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S2 (24-26)TIV1 (10-13)EMPTYS1 (19-21)TIV3 (20-23)TIV5 (55-58)TIV6 (58-61)AH2 (63-73)3H1 (78-80)AH1 (28-39)Updating...
connected with : NaN
molecule tags Transcription
source organism Homo sapiens
publication title Solution structure of the Zinc finger, C4-type domain of human COUP transcription factor 1
rcsb
molecule keywords COUP transcription factor 1
total genus 12
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2007-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00105 zf-C4 Zinc finger, C4 type (two domains)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 2eblA00
3G6PA 3VEKC 3DZUD 2C7AA 1A6YA 3GATA 1R4OA 2A66A 2VUSI 1HCQA 3VD6C 5CBXA 1HLZA 4OORA 3G6QA 1BY4A 4HCAA 2ENVA 2KAEA 4OV7A 2GDAA 2EBLA 3G8XA 1R4RA 1LO1A 4CN3A 5E6CA 4AA6A 4TNTA 3G9IA 5E6DA 4OLNA 1CITA 3G9MA 2NLLB 1HRAA 4CN5A 5L0MA 3DFVC 1R0NA 1KB6A 3G6TA 1GNFA 5GATA 1LV3A 4NQAB 3M9EA 1R4IA 1RGDA 4HN6A 1GATA 6GATA 2NLLA 4CN2C 3DFXA 1GA5A 1GDCA 1KB2A 5EMPA 3E00A 1R0NB 1GAUA 1GLUA 5E6AA 4HC7A 7GATA 4CN3D 3G99A 3G9OA 4CN7A 5CC0A 3E00D 3DZUA 3G97A 5E6BA 2VUTI 4ONDA 4HN5A 3G6UA 2HANB 1RXRA 4GATA 4HC9A 3G9JA 5E69A 5CC1A 3G8UA 4TMAI 2GATA 1DSZA 2VUUI 5EMCA 3FYLA 3CBBA 1YNWA 1R0OB 5KRBB 1KB4A 5EMQA 2M9WA 1HCPA 2HANA 2FF0A 5CBZA 3DZYA 3G9PA 1LATA 3G6RA 1R0OA 4IQRA 5CBYA 1DSZB 1YNWB 3DZYD
chains in the Genus database with same CATH superfamily
3G6PA 3VEKC 3DZUD 2C7AA 1A6YA 3GATA 1R4OA 2A66A 2VUSI 1HCQA 3VD6C 5CBXA 1HLZA 4OORA 3G6QA 1BY4A 4HCAA 2ENVA 2KAEA 4OV7A 2GDAA 2EBLA 3G8XA 1R4RA 1LO1A 4CN3A 5E6CA 4AA6A 4TNTA 3G9IA 5E6DA 3G27A 4OLNA 1CITA 3G9MA 2DS6A 2NLLB 1HRAA 4CN5A 5L0MA 3DFVC 1R0NA 1KB6A 3G6TA 1GNFA 5GATA 1LV3A 4NQAB 3M9EA 1R4IA 1RGDA 4HN6A 1GATA 6GATA 2NLLA 4CN2C 3DFXA 1GA5A 1GDCA 1KB2A 5EMPA 3E00A 1R0NB 1GAUA 1GLUA 5E6AA 4HC7A 7GATA 4CN3D 3G99A 3G9OA 4CN7A 5CC0A 3E00D 3DZUA 3G97A 5E6BA 2VUTI 2DS8A 4ONDA 4HN5A 3G6UA 2HANB 1RXRA 4GATA 4HC9A 3G9JA 5E69A 2DS5A 5CC1A 3G8UA 4TMAI 2GATA 1DSZA 2VUUI 5EMCA 3FYLA 3CBBA 1YNWA 1R0OB 5KRBB 1KB4A 5EMQA 2M9WA 1HCPA 2HANA 2FF0A 5CBZA 3DZYA 3G9PA 1LATA 3G6RA 1R0OA 4IQRA 5CBYA 1DSZB 1YNWB 3DZYD
chains in the Genus database with same CATH topology
3G6PA 3VEKC 3DZUD 2C7AA 1A6YA 3GATA 1R4OA 2A66A 2VUSI 1HCQA 3VD6C 5CBXA 1HLZA 4OORA 3G6QA 1BY4A 4HCAA 2ENVA 2KAEA 4OV7A 2GDAA 2EBLA 3G8XA 1R4RA 1LO1A 4CN3A 5E6CA 4AA6A 4TNTA 3G9IA 5E6DA 4OLNA 1CITA 3G9MA 2NLLB 1HRAA 4CN5A 5L0MA 3DFVC 1R0NA 1KB6A 3G6TA 1GNFA 5GATA 1LV3A 4NQAB 3M9EA 1R4IA 1RGDA 4HN6A 1GATA 6GATA 2NLLA 4CN2C 3DFXA 1GA5A 1GDCA 1KB2A 5EMPA 3E00A 1R0NB 1GAUA 1GLUA 5E6AA 4HC7A 7GATA 4CN3D 3G99A 3G9OA 4CN7A 5CC0A 3E00D 3DZUA 3G97A 5E6BA 2VUTI 4ONDA 4HN5A 3G6UA 2HANB 1RXRA 4GATA 4HC9A 3G9JA 5E69A 5CC1A 3G8UA 4TMAI 2GATA 1DSZA 2VUUI 5EMCA 3FYLA 3CBBA 1YNWA 1R0OB 5KRBB 1KB4A 5EMQA 2M9WA 1HCPA 2HANA 2FF0A 5CBZA 3DZYA 3G9PA 1LATA 3G6RA 1R0OA 4IQRA 5CBYA 1DSZB 1YNWB 3DZYD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G6P A;  3VEK C;  3DZU D;  2C7A A;  1A6Y A;  3GAT A;  1R4O A;  2A66 A;  2VUS I;  1HCQ A;  3VD6 C;  5CBX A;  1HLZ A;  4OOR A;  3G6Q A;  1BY4 A;  4HCA A;  2ENV A;  2KAE A;  4OV7 A;  2GDA A;  2EBL A;  3G8X A;  1R4R A;  1LO1 A;  4CN3 A;  5E6C A;  4AA6 A;  4TNT A;  3G9I A;  5E6D A;  4OLN A;  1CIT A;  3G9M A;  2NLL B;  1HRA A;  4CN5 A;  5L0M A;  3DFV C;  1R0N A;  1KB6 A;  3G6T A;  1GNF A;  5GAT A;  1LV3 A;  4NQA B;  3M9E A;  1R4I A;  1RGD A;  4HN6 A;  1GAT A;  6GAT A;  2NLL A;  4CN2 C;  3DFX A;  1GA5 A;  1GDC A;  1KB2 A;  5EMP A;  3E00 A;  1R0N B;  1GAU A;  1GLU A;  5E6A A;  4HC7 A;  7GAT A;  4CN3 D;  3G99 A;  3G9O A;  4CN7 A;  5CC0 A;  3E00 D;  3DZU A;  3G97 A;  5E6B A;  2VUT I;  4OND A;  4HN5 A;  3G6U A;  2HAN B;  1RXR A;  4GAT A;  4HC9 A;  3G9J A;  5E69 A;  5CC1 A;  3G8U A;  4TMA I;  2GAT A;  1DSZ A;  2VUU I;  5EMC A;  3FYL A;  3CBB A;  1YNW A;  1R0O B;  5KRB B;  1KB4 A;  5EMQ A;  2M9W A;  1HCP A;  2HAN A;  2FF0 A;  5CBZ A;  3DZY A;  3G9P A;  1LAT A;  3G6R A;  1R0O A;  4IQR A;  5CBY A;  1DSZ B;  1YNW B;  3DZY D; 
#chains in the Genus database with same CATH topology
 3G6P A;  3VEK C;  3DZU D;  2C7A A;  1A6Y A;  3GAT A;  1R4O A;  2A66 A;  2VUS I;  1HCQ A;  3VD6 C;  5CBX A;  1HLZ A;  4OOR A;  3G6Q A;  1BY4 A;  4HCA A;  2ENV A;  2KAE A;  4OV7 A;  2GDA A;  2EBL A;  3G8X A;  1R4R A;  1LO1 A;  4CN3 A;  5E6C A;  4AA6 A;  4TNT A;  3G9I A;  5E6D A;  3G27 A;  4OLN A;  1CIT A;  3G9M A;  2DS6 A;  2NLL B;  1HRA A;  4CN5 A;  5L0M A;  3DFV C;  1R0N A;  1KB6 A;  3G6T A;  1GNF A;  5GAT A;  1LV3 A;  4NQA B;  3M9E A;  1R4I A;  1RGD A;  4HN6 A;  1GAT A;  6GAT A;  2NLL A;  4CN2 C;  3DFX A;  1GA5 A;  1GDC A;  1KB2 A;  5EMP A;  3E00 A;  1R0N B;  1GAU A;  1GLU A;  5E6A A;  4HC7 A;  7GAT A;  4CN3 D;  3G99 A;  3G9O A;  4CN7 A;  5CC0 A;  3E00 D;  3DZU A;  3G97 A;  5E6B A;  2VUT I;  2DS8 A;  4OND A;  4HN5 A;  3G6U A;  2HAN B;  1RXR A;  4GAT A;  4HC9 A;  3G9J A;  5E69 A;  2DS5 A;  5CC1 A;  3G8U A;  4TMA I;  2GAT A;  1DSZ A;  2VUU I;  5EMC A;  3FYL A;  3CBB A;  1YNW A;  1R0O B;  5KRB B;  1KB4 A;  5EMQ A;  2M9W A;  1HCP A;  2HAN A;  2FF0 A;  5CBZ A;  3DZY A;  3G9P A;  1LAT A;  3G6R A;  1R0O A;  4IQR A;  5CBY A;  1DSZ B;  1YNW B;  3DZY D; 
#chains in the Genus database with same CATH homology
 3G6P A;  3VEK C;  3DZU D;  2C7A A;  1A6Y A;  3GAT A;  1R4O A;  2A66 A;  2VUS I;  1HCQ A;  3VD6 C;  5CBX A;  1HLZ A;  4OOR A;  3G6Q A;  1BY4 A;  4HCA A;  2ENV A;  2KAE A;  4OV7 A;  2GDA A;  2EBL A;  3G8X A;  1R4R A;  1LO1 A;  4CN3 A;  5E6C A;  4AA6 A;  4TNT A;  3G9I A;  5E6D A;  4OLN A;  1CIT A;  3G9M A;  2NLL B;  1HRA A;  4CN5 A;  5L0M A;  3DFV C;  1R0N A;  1KB6 A;  3G6T A;  1GNF A;  5GAT A;  1LV3 A;  4NQA B;  3M9E A;  1R4I A;  1RGD A;  4HN6 A;  1GAT A;  6GAT A;  2NLL A;  4CN2 C;  3DFX A;  1GA5 A;  1GDC A;  1KB2 A;  5EMP A;  3E00 A;  1R0N B;  1GAU A;  1GLU A;  5E6A A;  4HC7 A;  7GAT A;  4CN3 D;  3G99 A;  3G9O A;  4CN7 A;  5CC0 A;  3E00 D;  3DZU A;  3G97 A;  5E6B A;  2VUT I;  4OND A;  4HN5 A;  3G6U A;  2HAN B;  1RXR A;  4GAT A;  4HC9 A;  3G9J A;  5E69 A;  5CC1 A;  3G8U A;  4TMA I;  2GAT A;  1DSZ A;  2VUU I;  5EMC A;  3FYL A;  3CBB A;  1YNW A;  1R0O B;  5KRB B;  1KB4 A;  5EMQ A;  2M9W A;  1HCP A;  2HAN A;  2FF0 A;  5CBZ A;  3DZY A;  3G9P A;  1LAT A;  3G6R A;  1R0O A;  4IQR A;  5CBY A;  1DSZ B;  1YNW B;  3DZY D; 
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