2ENVA

Solution sturcture of the c4-type zinc finger domain from human peroxisome proliferator-activated receptor delta
Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
88
structure length
88
Chain Sequence
GSSGSSGMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (74-77)Updating...
connected with : NaN
molecule tags Transcription
source organism Homo sapiens
publication title Solution sturcture of the C4-type zinc finger domain from human Peroxisome proliferator-activated receptor delta
rcsb
molecule keywords Peroxisome proliferator-activated receptor delta
total genus 14
structure length 88
sequence length 88
ec nomenclature
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00105 zf-C4 Zinc finger, C4 type (two domains)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 2envA00
1KB6A 5CC0A 3DZYD 3G6QA 1HLZA 4HC7A 2VUUI 3DZUD 1GLUA 3DFVC 1DSZA 2M9WA 4HN5A 3G9OA 6GATA 3G8UA 3G97A 1GNFA 3E00A 1R0NB 5CBZA 1KB2A 5KRBB 4GATA 1LO1A 1LATA 1BY4A 5EMCA 3VEKC 7GATA 4TMAI 2HANA 1HRAA 1GATA 1R0OA 5CBYA 5GATA 4CN3A 3GATA 1DSZB 2VUTI 2NLLA 2VUSI 2A66A 2GATA 5E6BA 1YNWA 1LV3A 1KB4A 1HCQA 4OLNA 3G9MA 3G9JA 2HANB 1R0OB 3CBBA 4NQAB 5L0MA 5E69A 3DZYA 1R4OA 3VD6C 4AA6A 5EMQA 3G6PA 1RXRA 3DZUA 2C7AA 5CC1A 1A6YA 5E6CA 3G9IA 5E6AA 2EBLA 3E00D 3M9EA 2NLLB 1HCPA 2ENVA 1YNWB 3G9PA 1RGDA 4CN5A 3G6TA 1GDCA 2GDAA 1GA5A 4OORA 4CN3D 4HN6A 2FF0A 3FYLA 3G99A 4OV7A 5E6DA 4CN7A 3DFXA 1R4RA 4HCAA 3G6UA 5CBXA 4HC9A 3G8XA 1R0NA 5EMPA 4TNTA 4ONDA 4IQRA 1CITA 2KAEA 3G6RA 1R4IA 1GAUA 4CN2C
chains in the Genus database with same CATH superfamily
1KB6A 5CC0A 3DZYD 3G6QA 1HLZA 4HC7A 2VUUI 3DZUD 1GLUA 3DFVC 1DSZA 2M9WA 4HN5A 3G9OA 6GATA 3G8UA 2DS6A 3G97A 1GNFA 3E00A 1R0NB 5CBZA 1KB2A 5KRBB 4GATA 1LO1A 1LATA 1BY4A 5EMCA 3VEKC 7GATA 4TMAI 2HANA 1HRAA 1GATA 1R0OA 5CBYA 5GATA 4CN3A 3GATA 1DSZB 2VUTI 2NLLA 2DS8A 2VUSI 2A66A 2GATA 5E6BA 1YNWA 1LV3A 1KB4A 1HCQA 4OLNA 3G9MA 3G9JA 2HANB 1R0OB 3CBBA 4NQAB 5L0MA 5E69A 3DZYA 1R4OA 3VD6C 4AA6A 5EMQA 3G6PA 1RXRA 3DZUA 2C7AA 5CC1A 1A6YA 5E6CA 3G9IA 5E6AA 2EBLA 3E00D 3M9EA 2NLLB 1HCPA 2ENVA 2DS5A 1YNWB 3G9PA 1RGDA 4CN5A 3G6TA 1GDCA 2GDAA 1GA5A 4OORA 4CN3D 4HN6A 2FF0A 3G27A 3FYLA 3G99A 4OV7A 5E6DA 4CN7A 3DFXA 1R4RA 4HCAA 3G6UA 5CBXA 4HC9A 3G8XA 1R0NA 5EMPA 4TNTA 4ONDA 4IQRA 1CITA 2KAEA 3G6RA 1R4IA 1GAUA 4CN2C
chains in the Genus database with same CATH topology
1KB6A 5CC0A 3DZYD 3G6QA 1HLZA 4HC7A 2VUUI 3DZUD 1GLUA 3DFVC 1DSZA 2M9WA 4HN5A 3G9OA 6GATA 3G8UA 3G97A 1GNFA 3E00A 1R0NB 5CBZA 1KB2A 5KRBB 4GATA 1LO1A 1LATA 1BY4A 5EMCA 3VEKC 7GATA 4TMAI 2HANA 1HRAA 1GATA 1R0OA 5CBYA 5GATA 4CN3A 3GATA 1DSZB 2VUTI 2NLLA 2VUSI 2A66A 2GATA 5E6BA 1YNWA 1LV3A 1KB4A 1HCQA 4OLNA 3G9MA 3G9JA 2HANB 1R0OB 3CBBA 4NQAB 5L0MA 5E69A 3DZYA 1R4OA 3VD6C 4AA6A 5EMQA 3G6PA 1RXRA 3DZUA 2C7AA 5CC1A 1A6YA 5E6CA 3G9IA 5E6AA 2EBLA 3E00D 3M9EA 2NLLB 1HCPA 2ENVA 1YNWB 3G9PA 1RGDA 4CN5A 3G6TA 1GDCA 2GDAA 1GA5A 4OORA 4CN3D 4HN6A 2FF0A 3FYLA 3G99A 4OV7A 5E6DA 4CN7A 3DFXA 1R4RA 4HCAA 3G6UA 5CBXA 4HC9A 3G8XA 1R0NA 5EMPA 4TNTA 4ONDA 4IQRA 1CITA 2KAEA 3G6RA 1R4IA 1GAUA 4CN2C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KB6 A;  5CC0 A;  3DZY D;  3G6Q A;  1HLZ A;  4HC7 A;  2VUU I;  3DZU D;  1GLU A;  3DFV C;  1DSZ A;  2M9W A;  4HN5 A;  3G9O A;  6GAT A;  3G8U A;  3G97 A;  1GNF A;  3E00 A;  1R0N B;  5CBZ A;  1KB2 A;  5KRB B;  4GAT A;  1LO1 A;  1LAT A;  1BY4 A;  5EMC A;  3VEK C;  7GAT A;  4TMA I;  2HAN A;  1HRA A;  1GAT A;  1R0O A;  5CBY A;  5GAT A;  4CN3 A;  3GAT A;  1DSZ B;  2VUT I;  2NLL A;  2VUS I;  2A66 A;  2GAT A;  5E6B A;  1YNW A;  1LV3 A;  1KB4 A;  1HCQ A;  4OLN A;  3G9M A;  3G9J A;  2HAN B;  1R0O B;  3CBB A;  4NQA B;  5L0M A;  5E69 A;  3DZY A;  1R4O A;  3VD6 C;  4AA6 A;  5EMQ A;  3G6P A;  1RXR A;  3DZU A;  2C7A A;  5CC1 A;  1A6Y A;  5E6C A;  3G9I A;  5E6A A;  2EBL A;  3E00 D;  3M9E A;  2NLL B;  1HCP A;  2ENV A;  1YNW B;  3G9P A;  1RGD A;  4CN5 A;  3G6T A;  1GDC A;  2GDA A;  1GA5 A;  4OOR A;  4CN3 D;  4HN6 A;  2FF0 A;  3FYL A;  3G99 A;  4OV7 A;  5E6D A;  4CN7 A;  3DFX A;  1R4R A;  4HCA A;  3G6U A;  5CBX A;  4HC9 A;  3G8X A;  1R0N A;  5EMP A;  4TNT A;  4OND A;  4IQR A;  1CIT A;  2KAE A;  3G6R A;  1R4I A;  1GAU A;  4CN2 C; 
#chains in the Genus database with same CATH topology
 1KB6 A;  5CC0 A;  3DZY D;  3G6Q A;  1HLZ A;  4HC7 A;  2VUU I;  3DZU D;  1GLU A;  3DFV C;  1DSZ A;  2M9W A;  4HN5 A;  3G9O A;  6GAT A;  3G8U A;  2DS6 A;  3G97 A;  1GNF A;  3E00 A;  1R0N B;  5CBZ A;  1KB2 A;  5KRB B;  4GAT A;  1LO1 A;  1LAT A;  1BY4 A;  5EMC A;  3VEK C;  7GAT A;  4TMA I;  2HAN A;  1HRA A;  1GAT A;  1R0O A;  5CBY A;  5GAT A;  4CN3 A;  3GAT A;  1DSZ B;  2VUT I;  2NLL A;  2DS8 A;  2VUS I;  2A66 A;  2GAT A;  5E6B A;  1YNW A;  1LV3 A;  1KB4 A;  1HCQ A;  4OLN A;  3G9M A;  3G9J A;  2HAN B;  1R0O B;  3CBB A;  4NQA B;  5L0M A;  5E69 A;  3DZY A;  1R4O A;  3VD6 C;  4AA6 A;  5EMQ A;  3G6P A;  1RXR A;  3DZU A;  2C7A A;  5CC1 A;  1A6Y A;  5E6C A;  3G9I A;  5E6A A;  2EBL A;  3E00 D;  3M9E A;  2NLL B;  1HCP A;  2ENV A;  2DS5 A;  1YNW B;  3G9P A;  1RGD A;  4CN5 A;  3G6T A;  1GDC A;  2GDA A;  1GA5 A;  4OOR A;  4CN3 D;  4HN6 A;  2FF0 A;  3G27 A;  3FYL A;  3G99 A;  4OV7 A;  5E6D A;  4CN7 A;  3DFX A;  1R4R A;  4HCA A;  3G6U A;  5CBX A;  4HC9 A;  3G8X A;  1R0N A;  5EMP A;  4TNT A;  4OND A;  4IQR A;  1CIT A;  2KAE A;  3G6R A;  1R4I A;  1GAU A;  4CN2 C; 
#chains in the Genus database with same CATH homology
 1KB6 A;  5CC0 A;  3DZY D;  3G6Q A;  1HLZ A;  4HC7 A;  2VUU I;  3DZU D;  1GLU A;  3DFV C;  1DSZ A;  2M9W A;  4HN5 A;  3G9O A;  6GAT A;  3G8U A;  3G97 A;  1GNF A;  3E00 A;  1R0N B;  5CBZ A;  1KB2 A;  5KRB B;  4GAT A;  1LO1 A;  1LAT A;  1BY4 A;  5EMC A;  3VEK C;  7GAT A;  4TMA I;  2HAN A;  1HRA A;  1GAT A;  1R0O A;  5CBY A;  5GAT A;  4CN3 A;  3GAT A;  1DSZ B;  2VUT I;  2NLL A;  2VUS I;  2A66 A;  2GAT A;  5E6B A;  1YNW A;  1LV3 A;  1KB4 A;  1HCQ A;  4OLN A;  3G9M A;  3G9J A;  2HAN B;  1R0O B;  3CBB A;  4NQA B;  5L0M A;  5E69 A;  3DZY A;  1R4O A;  3VD6 C;  4AA6 A;  5EMQ A;  3G6P A;  1RXR A;  3DZU A;  2C7A A;  5CC1 A;  1A6Y A;  5E6C A;  3G9I A;  5E6A A;  2EBL A;  3E00 D;  3M9E A;  2NLL B;  1HCP A;  2ENV A;  1YNW B;  3G9P A;  1RGD A;  4CN5 A;  3G6T A;  1GDC A;  2GDA A;  1GA5 A;  4OOR A;  4CN3 D;  4HN6 A;  2FF0 A;  3FYL A;  3G99 A;  4OV7 A;  5E6D A;  4CN7 A;  3DFX A;  1R4R A;  4HCA A;  3G6U A;  5CBX A;  4HC9 A;  3G8X A;  1R0N A;  5EMP A;  4TNT A;  4OND A;  4IQR A;  1CIT A;  2KAE A;  3G6R A;  1R4I A;  1GAU A;  4CN2 C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.