2G0QA

Solution structure of at5g39720.1 from arabidopsis thaliana
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
149
structure length
149
Chain Sequence
CSSDSLQLHNVFVYGSFQDPDVINVMLDRTPEIVSATLPGFQRFRLKGRLYPCIVPSEKGEVHGKVLMGVTSDELENLDAVEGNEYERVTVGIVREDNSEKMAVKTYMWINKADPDMFGEWNFEEWKRLHKKKFIETFKKIMECKKKPQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Arabidopsis thaliana
molecule keywords AT5G39720.1 protein
total genus 28
structure length 149
sequence length 149
ec nomenclature
pdb deposition date 2006-02-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06094 GGACT Gamma-glutamyl cyclotransferase, AIG2-like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.490.10 Alpha Beta Roll Hypothetical upf0131 protein ytfp Gamma-glutamyl cyclotransferase-like 2g0qA01
2JQVA 3JUCA 3JUDA 4ISTA 4ISSA 2Q53A 2I5TA 1VKBA 2RBHA 2QIKA 2PN7A 2KL2A 2G0QA 3CRYA 1V30A 3JUBA 5C5ZA 1XHSA
chains in the Genus database with same CATH superfamily
3JUCA 3JUDA 5C5ZA 2I5TA 3VKGA 3JUBA 2G0QA 2XVOA 4ISTA 1VKBA 2RBHA 2KL2A 2JQVA 3CRYA 2QIKA 4ISSA 2Q53A 2PN7A 1V30A 3VKHA 1XHSA
chains in the Genus database with same CATH topology
2JQVA 3JUCA 3JUDA 4ISTA 4ISSA 2Q53A 2I5TA 1VKBA 2RBHA 2QIKA 2PN7A 2KL2A 2G0QA 3CRYA 1V30A 3JUBA 5C5ZA 1XHSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JQV A;  3JUC A;  3JUD A;  4IST A;  4ISS A;  2Q53 A;  2I5T A;  1VKB A;  2RBH A;  2QIK A;  2PN7 A;  2KL2 A;  2G0Q A;  3CRY A;  1V30 A;  3JUB A;  5C5Z A;  1XHS A; 
#chains in the Genus database with same CATH topology
 3JUC A;  3JUD A;  5C5Z A;  2I5T A;  3VKG A;  3JUB A;  2G0Q A;  2XVO A;  4IST A;  1VKB A;  2RBH A;  2KL2 A;  2JQV A;  3CRY A;  2QIK A;  4ISS A;  2Q53 A;  2PN7 A;  1V30 A;  3VKH A;  1XHS A; 
#chains in the Genus database with same CATH homology
 2JQV A;  3JUC A;  3JUD A;  4IST A;  4ISS A;  2Q53 A;  2I5T A;  1VKB A;  2RBH A;  2QIK A;  2PN7 A;  2KL2 A;  2G0Q A;  3CRY A;  1V30 A;  3JUB A;  5C5Z A;  1XHS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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