The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
26
|
sequence length |
102
|
structure length |
102
|
Chain Sequence |
MYGKLNDLLEDLQEVLKHVNQHWQGGQKNMNKVDHHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDEIKQQLQGGDNSLHNVHENIKEIFHHLEELVHR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and dynamics of de novo proteins from a designed superfamily of 4-helix bundles.
pubmed doi rcsb |
| molecule tags |
De novo protein
|
| source organism |
Unidentified
|
| molecule keywords |
de novo protein S836
|
| total genus |
26
|
| structure length |
102
|
| sequence length |
102
|
| ec nomenclature | |
| pdb deposition date | 2007-08-16 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | hypothetical protein mp506/mpn330, domain 1 | Designed four-helix bundle protein |
#chains in the Genus database with same CATH superfamily 1P68 A; 3VJF A; 2JUA A; #chains in the Genus database with same CATH topology 3VJF A; 2JUA A; 1P68 A; 2M9X A; 1V9V A; 4CQ4 A; 4GN0 A; 1TD6 A; 4L3U A; #chains in the Genus database with same CATH homology 1P68 A; 3VJF A; 2JUA A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
