2LBHA

Solution structure of the dimeric form of a unliganded bovine neurophysin, minimized average structure
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
92
structure length
92
Chain Sequence
AVLDLDVRTCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCSPDGCHEDPACDPEAAFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Peptide binding protein, hormone
molecule keywords Neurophysin 1
publication title Structural Basis of the Dimerization-Induced Increase in Neurophysin-Hormone Affinity: Interplay of Inter-Domain and Inter-Subunit Interactions
rcsb
source organism Bos taurus
total genus 8
structure length 92
sequence length 92
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00184 Hormone_5 Neurohypophysial hormones, C-terminal Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.9.10 Mainly Beta Sandwich Neurophysin II; Chain A Neurohypophysial hormone domain 2lbhA00
2HNWA 1NPOA 1NPOC 2BN2A 2HNVA 1L5CA 2LBHA 1JK6A 2LBNA 2HNUA 1JK4A 1L5DA
chains in the Genus database with same CATH superfamily
2HNWA 1NPOA 1NPOC 2BN2A 2HNVA 1L5CA 2LBHA 1JK6A 2LBNA 2HNUA 1JK4A 1L5DA
chains in the Genus database with same CATH topology
2HNWA 1NPOA 1NPOC 2BN2A 2HNVA 1L5CA 2LBHA 1JK6A 2LBNA 2HNUA 1JK4A 1L5DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HNW A;  1NPO A;  1NPO C;  2BN2 A;  2HNV A;  1L5C A;  2LBH A;  1JK6 A;  2LBN A;  2HNU A;  1JK4 A;  1L5D A; 
#chains in the Genus database with same CATH topology
 2HNW A;  1NPO A;  1NPO C;  2BN2 A;  2HNV A;  1L5C A;  2LBH A;  1JK6 A;  2LBN A;  2HNU A;  1JK4 A;  1L5D A; 
#chains in the Genus database with same CATH homology
 2HNW A;  1NPO A;  1NPO C;  2BN2 A;  2HNV A;  1L5C A;  2LBH A;  1JK6 A;  2LBN A;  2HNU A;  1JK4 A;  1L5D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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