2LN7A

Backbone 1h, 13c, and 15n chemical shift assignments for the catalytic domain of b. anthracis srtd
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
147
structure length
147
Chain Sequence
GSHMSSQTEHKEGEKVAMLNIPKLKKKFSIYWGADDATLKKGVGMFVSDVTTTPSGGGHTVLSGHRDTVFTDLGQLKEKDTLVLEYDNKTYTYEIQKIWITHADDRTVIIKKEEPILTLTTCYPFDYIGDAPDRYIIEAKLTGSYSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords LPXTG-site transpeptidase family protein
publication title Solution Structure of the Sortase Required for Efficient Production of Infectious Bacillus anthracis Spores.
pubmed doi rcsb
source organism Bacillus anthracis
total genus 21
structure length 147
sequence length 147
ec nomenclature
pdb deposition date 2011-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04203 Sortase Sortase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.260.10 Mainly Beta Beta Barrel Sortase; Chain: A; Sortase 2ln7A00
5CUWA 2KW8A 3RBJA 3FN6A 3TB7A 4O8LB 4D70A 2W1JA 2XWGA 1RZ2A 1QXAA 2OQWA 3FN5A 5JCVA 5GO5A 3G69A 5GYJA 3G66A 1T2PA 2WTSA 1QX6A 3TBEA 4Y4QA 1IJAA 2KIDA 2OQZA 3RBKA 2RUIA 3PSQA 4LFDA 2MLMA 4O8LA 4O8TA 3O0PA 4G1JA 2W1KA 1QWZA 3FN7A 5B23A 4UX7A 4D7WA 1T2WA 3RBIA 2LN7A 1NG5A 3RCCA 1T2OA 4G1HA 5K9AA 3RE9A
chains in the Genus database with same CATH superfamily
5CUWA 2KW8A 3RBJA 3FN6A 3TB7A 4O8LB 4D70A 2W1JA 2XWGA 1RZ2A 1QXAA 2OQWA 3FN5A 5JCVA 5GO5A 3G69A 5GYJA 3G66A 1T2PA 2WTSA 1QX6A 3TBEA 4Y4QA 1IJAA 2KIDA 2OQZA 3RBKA 2RUIA 3PSQA 4LFDA 2MLMA 4O8LA 4O8TA 3O0PA 4G1JA 2W1KA 1QWZA 3FN7A 5B23A 4UX7A 4D7WA 1T2WA 3RBIA 2LN7A 1NG5A 3RCCA 1T2OA 4G1HA 5K9AA 3RE9A
chains in the Genus database with same CATH topology
5CUWA 2KW8A 3RBJA 3FN6A 3TB7A 4O8LB 4D70A 2W1JA 2XWGA 1RZ2A 1QXAA 2OQWA 3FN5A 5JCVA 5GO5A 3G69A 5GYJA 3G66A 1T2PA 2WTSA 1QX6A 3TBEA 4Y4QA 1IJAA 2KIDA 2OQZA 3RBKA 2RUIA 3PSQA 4LFDA 2MLMA 4O8LA 4O8TA 3O0PA 4G1JA 2W1KA 1QWZA 3FN7A 5B23A 4UX7A 4D7WA 1T2WA 3RBIA 2LN7A 1NG5A 3RCCA 1T2OA 4G1HA 5K9AA 3RE9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CUW A;  2KW8 A;  3RBJ A;  3FN6 A;  3TB7 A;  4O8L B;  4D70 A;  2W1J A;  2XWG A;  1RZ2 A;  1QXA A;  2OQW A;  3FN5 A;  5JCV A;  5GO5 A;  3G69 A;  5GYJ A;  3G66 A;  1T2P A;  2WTS A;  1QX6 A;  3TBE A;  4Y4Q A;  1IJA A;  2KID A;  2OQZ A;  3RBK A;  2RUI A;  3PSQ A;  4LFD A;  2MLM A;  4O8L A;  4O8T A;  3O0P A;  4G1J A;  2W1K A;  1QWZ A;  3FN7 A;  5B23 A;  4UX7 A;  4D7W A;  1T2W A;  3RBI A;  2LN7 A;  1NG5 A;  3RCC A;  1T2O A;  4G1H A;  5K9A A;  3RE9 A; 
#chains in the Genus database with same CATH topology
 5CUW A;  2KW8 A;  3RBJ A;  3FN6 A;  3TB7 A;  4O8L B;  4D70 A;  2W1J A;  2XWG A;  1RZ2 A;  1QXA A;  2OQW A;  3FN5 A;  5JCV A;  5GO5 A;  3G69 A;  5GYJ A;  3G66 A;  1T2P A;  2WTS A;  1QX6 A;  3TBE A;  4Y4Q A;  1IJA A;  2KID A;  2OQZ A;  3RBK A;  2RUI A;  3PSQ A;  4LFD A;  2MLM A;  4O8L A;  4O8T A;  3O0P A;  4G1J A;  2W1K A;  1QWZ A;  3FN7 A;  5B23 A;  4UX7 A;  4D7W A;  1T2W A;  3RBI A;  2LN7 A;  1NG5 A;  3RCC A;  1T2O A;  4G1H A;  5K9A A;  3RE9 A; 
#chains in the Genus database with same CATH homology
 5CUW A;  2KW8 A;  3RBJ A;  3FN6 A;  3TB7 A;  4O8L B;  4D70 A;  2W1J A;  2XWG A;  1RZ2 A;  1QXA A;  2OQW A;  3FN5 A;  5JCV A;  5GO5 A;  3G69 A;  5GYJ A;  3G66 A;  1T2P A;  2WTS A;  1QX6 A;  3TBE A;  4Y4Q A;  1IJA A;  2KID A;  2OQZ A;  3RBK A;  2RUI A;  3PSQ A;  4LFD A;  2MLM A;  4O8L A;  4O8T A;  3O0P A;  4G1J A;  2W1K A;  1QWZ A;  3FN7 A;  5B23 A;  4UX7 A;  4D7W A;  1T2W A;  3RBI A;  2LN7 A;  1NG5 A;  3RCC A;  1T2O A;  4G1H A;  5K9A A;  3RE9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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