2NLLB

Retinoid x receptor-thyroid hormone receptor dna-binding domain heterodimer bound to thyroid response element dna
Total Genus 32
102030405060708090100051015202530
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
103
structure length
103
Chain Sequence
DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/dna
source organism Homo sapiens
publication title Structural determinants of nuclear receptor assembly on DNA direct repeats.
pubmed doi rcsb
molecule keywords DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*TP*TP*(5IU)P*CP*AP*GP*GP*TP*
total genus 32
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 1996-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00105 zf-C4 Zinc finger, C4 type (two domains)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 2nllB00
3G97A 5EMCA 1R0NA 2HANB 5E69A 5KRBB 3G9MA 5CBXA 1KB6A 3G9PA 4TNTA 3DZYD 5CBZA 2GDAA 1R0OB 1GLUA 5E6DA 2EBLA 1LV3A 3G6QA 4CN7A 1LO1A 3G8XA 2GATA 1R0OA 2FF0A 3G6TA 1LATA 3E00A 5L0MA 5EMPA 3DZUA 3VEKC 1R4OA 2HANA 6GATA 5CC1A 4NQAB 4CN3A 4OV7A 3G6PA 2M9WA 2VUUI 5E6CA 1GAUA 3M9EA 5E6AA 2KAEA 3G9OA 5EMQA 1KB4A 4OLNA 1CITA 3E00D 3G6RA 3DZUD 1R4IA 7GATA 5GATA 3CBBA 4HN5A 4CN5A 3G99A 2NLLB 2A66A 1GDCA 1HLZA 4IQRA 2VUSI 2NLLA 5CC0A 4CN3D 3VD6C 3G9IA 1DSZB 4HC7A 4HN6A 1HRAA 4ONDA 1YNWB 1HCQA 4TMAI 1R0NB 1RXRA 2ENVA 4HCAA 4GATA 4OORA 4HC9A 1A6YA 2VUTI 2C7AA 5E6BA 3DFXA 1GNFA 3G9JA 3GATA 1KB2A 5CBYA 1R4RA 3DZYA 3FYLA 1GATA 3G6UA 4AA6A 1RGDA 1BY4A 1DSZA 3DFVC 1HCPA 3G8UA 4CN2C 1GA5A 1YNWA
chains in the Genus database with same CATH superfamily
3G97A 5EMCA 1R0NA 2HANB 5E69A 2DS8A 5KRBB 3G9MA 5CBXA 1KB6A 3G9PA 4TNTA 3DZYD 5CBZA 2GDAA 1R0OB 1GLUA 5E6DA 2EBLA 1LV3A 3G6QA 4CN7A 1LO1A 3G8XA 2GATA 1R0OA 2FF0A 3G6TA 1LATA 3E00A 5L0MA 5EMPA 3DZUA 3VEKC 1R4OA 2HANA 6GATA 2DS5A 5CC1A 3G27A 4NQAB 4CN3A 4OV7A 3G6PA 2M9WA 2VUUI 5E6CA 2DS6A 1GAUA 3M9EA 5E6AA 2KAEA 3G9OA 5EMQA 1KB4A 4OLNA 1CITA 3E00D 3G6RA 3DZUD 1R4IA 7GATA 5GATA 3CBBA 4HN5A 4CN5A 3G99A 2NLLB 2A66A 1GDCA 1HLZA 4IQRA 2VUSI 2NLLA 5CC0A 4CN3D 3VD6C 3G9IA 1DSZB 4HC7A 4HN6A 1HRAA 4ONDA 1YNWB 1HCQA 4TMAI 1R0NB 1RXRA 2ENVA 4HCAA 4GATA 4OORA 4HC9A 1A6YA 2VUTI 2C7AA 5E6BA 3DFXA 1GNFA 3G9JA 3GATA 1KB2A 5CBYA 1R4RA 3DZYA 3FYLA 1GATA 3G6UA 4AA6A 1RGDA 1BY4A 1DSZA 3DFVC 1HCPA 3G8UA 4CN2C 1GA5A 1YNWA
chains in the Genus database with same CATH topology
3G97A 5EMCA 1R0NA 2HANB 5E69A 5KRBB 3G9MA 5CBXA 1KB6A 3G9PA 4TNTA 3DZYD 5CBZA 2GDAA 1R0OB 1GLUA 5E6DA 2EBLA 1LV3A 3G6QA 4CN7A 1LO1A 3G8XA 2GATA 1R0OA 2FF0A 3G6TA 1LATA 3E00A 5L0MA 5EMPA 3DZUA 3VEKC 1R4OA 2HANA 6GATA 5CC1A 4NQAB 4CN3A 4OV7A 3G6PA 2M9WA 2VUUI 5E6CA 1GAUA 3M9EA 5E6AA 2KAEA 3G9OA 5EMQA 1KB4A 4OLNA 1CITA 3E00D 3G6RA 3DZUD 1R4IA 7GATA 5GATA 3CBBA 4HN5A 4CN5A 3G99A 2NLLB 2A66A 1GDCA 1HLZA 4IQRA 2VUSI 2NLLA 5CC0A 4CN3D 3VD6C 3G9IA 1DSZB 4HC7A 4HN6A 1HRAA 4ONDA 1YNWB 1HCQA 4TMAI 1R0NB 1RXRA 2ENVA 4HCAA 4GATA 4OORA 4HC9A 1A6YA 2VUTI 2C7AA 5E6BA 3DFXA 1GNFA 3G9JA 3GATA 1KB2A 5CBYA 1R4RA 3DZYA 3FYLA 1GATA 3G6UA 4AA6A 1RGDA 1BY4A 1DSZA 3DFVC 1HCPA 3G8UA 4CN2C 1GA5A 1YNWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G97 A;  5EMC A;  1R0N A;  2HAN B;  5E69 A;  5KRB B;  3G9M A;  5CBX A;  1KB6 A;  3G9P A;  4TNT A;  3DZY D;  5CBZ A;  2GDA A;  1R0O B;  1GLU A;  5E6D A;  2EBL A;  1LV3 A;  3G6Q A;  4CN7 A;  1LO1 A;  3G8X A;  2GAT A;  1R0O A;  2FF0 A;  3G6T A;  1LAT A;  3E00 A;  5L0M A;  5EMP A;  3DZU A;  3VEK C;  1R4O A;  2HAN A;  6GAT A;  5CC1 A;  4NQA B;  4CN3 A;  4OV7 A;  3G6P A;  2M9W A;  2VUU I;  5E6C A;  1GAU A;  3M9E A;  5E6A A;  2KAE A;  3G9O A;  5EMQ A;  1KB4 A;  4OLN A;  1CIT A;  3E00 D;  3G6R A;  3DZU D;  1R4I A;  7GAT A;  5GAT A;  3CBB A;  4HN5 A;  4CN5 A;  3G99 A;  2NLL B;  2A66 A;  1GDC A;  1HLZ A;  4IQR A;  2VUS I;  2NLL A;  5CC0 A;  4CN3 D;  3VD6 C;  3G9I A;  1DSZ B;  4HC7 A;  4HN6 A;  1HRA A;  4OND A;  1YNW B;  1HCQ A;  4TMA I;  1R0N B;  1RXR A;  2ENV A;  4HCA A;  4GAT A;  4OOR A;  4HC9 A;  1A6Y A;  2VUT I;  2C7A A;  5E6B A;  3DFX A;  1GNF A;  3G9J A;  3GAT A;  1KB2 A;  5CBY A;  1R4R A;  3DZY A;  3FYL A;  1GAT A;  3G6U A;  4AA6 A;  1RGD A;  1BY4 A;  1DSZ A;  3DFV C;  1HCP A;  3G8U A;  4CN2 C;  1GA5 A;  1YNW A; 
#chains in the Genus database with same CATH topology
 3G97 A;  5EMC A;  1R0N A;  2HAN B;  5E69 A;  2DS8 A;  5KRB B;  3G9M A;  5CBX A;  1KB6 A;  3G9P A;  4TNT A;  3DZY D;  5CBZ A;  2GDA A;  1R0O B;  1GLU A;  5E6D A;  2EBL A;  1LV3 A;  3G6Q A;  4CN7 A;  1LO1 A;  3G8X A;  2GAT A;  1R0O A;  2FF0 A;  3G6T A;  1LAT A;  3E00 A;  5L0M A;  5EMP A;  3DZU A;  3VEK C;  1R4O A;  2HAN A;  6GAT A;  2DS5 A;  5CC1 A;  3G27 A;  4NQA B;  4CN3 A;  4OV7 A;  3G6P A;  2M9W A;  2VUU I;  5E6C A;  2DS6 A;  1GAU A;  3M9E A;  5E6A A;  2KAE A;  3G9O A;  5EMQ A;  1KB4 A;  4OLN A;  1CIT A;  3E00 D;  3G6R A;  3DZU D;  1R4I A;  7GAT A;  5GAT A;  3CBB A;  4HN5 A;  4CN5 A;  3G99 A;  2NLL B;  2A66 A;  1GDC A;  1HLZ A;  4IQR A;  2VUS I;  2NLL A;  5CC0 A;  4CN3 D;  3VD6 C;  3G9I A;  1DSZ B;  4HC7 A;  4HN6 A;  1HRA A;  4OND A;  1YNW B;  1HCQ A;  4TMA I;  1R0N B;  1RXR A;  2ENV A;  4HCA A;  4GAT A;  4OOR A;  4HC9 A;  1A6Y A;  2VUT I;  2C7A A;  5E6B A;  3DFX A;  1GNF A;  3G9J A;  3GAT A;  1KB2 A;  5CBY A;  1R4R A;  3DZY A;  3FYL A;  1GAT A;  3G6U A;  4AA6 A;  1RGD A;  1BY4 A;  1DSZ A;  3DFV C;  1HCP A;  3G8U A;  4CN2 C;  1GA5 A;  1YNW A; 
#chains in the Genus database with same CATH homology
 3G97 A;  5EMC A;  1R0N A;  2HAN B;  5E69 A;  5KRB B;  3G9M A;  5CBX A;  1KB6 A;  3G9P A;  4TNT A;  3DZY D;  5CBZ A;  2GDA A;  1R0O B;  1GLU A;  5E6D A;  2EBL A;  1LV3 A;  3G6Q A;  4CN7 A;  1LO1 A;  3G8X A;  2GAT A;  1R0O A;  2FF0 A;  3G6T A;  1LAT A;  3E00 A;  5L0M A;  5EMP A;  3DZU A;  3VEK C;  1R4O A;  2HAN A;  6GAT A;  5CC1 A;  4NQA B;  4CN3 A;  4OV7 A;  3G6P A;  2M9W A;  2VUU I;  5E6C A;  1GAU A;  3M9E A;  5E6A A;  2KAE A;  3G9O A;  5EMQ A;  1KB4 A;  4OLN A;  1CIT A;  3E00 D;  3G6R A;  3DZU D;  1R4I A;  7GAT A;  5GAT A;  3CBB A;  4HN5 A;  4CN5 A;  3G99 A;  2NLL B;  2A66 A;  1GDC A;  1HLZ A;  4IQR A;  2VUS I;  2NLL A;  5CC0 A;  4CN3 D;  3VD6 C;  3G9I A;  1DSZ B;  4HC7 A;  4HN6 A;  1HRA A;  4OND A;  1YNW B;  1HCQ A;  4TMA I;  1R0N B;  1RXR A;  2ENV A;  4HCA A;  4GAT A;  4OOR A;  4HC9 A;  1A6Y A;  2VUT I;  2C7A A;  5E6B A;  3DFX A;  1GNF A;  3G9J A;  3GAT A;  1KB2 A;  5CBY A;  1R4R A;  3DZY A;  3FYL A;  1GAT A;  3G6U A;  4AA6 A;  1RGD A;  1BY4 A;  1DSZ A;  3DFV C;  1HCP A;  3G8U A;  4CN2 C;  1GA5 A;  1YNW A; 
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