2OQO | Genus

Total Genus 65

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	65
sequence length	187
structure length	181
Chain Sequence	TIGIQKRFYVSIDKIPEHVINAFVATEDRNFWHHFGIDPVAIVRAAIVNVQGGSTITQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQVYFGKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQYEEAVNK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 181 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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181 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Aquifex aeolicus
publication title	Crystal structure of a peptidoglycan glycosyltransferase suggests a model for processive glycan chain synthesis. pubmed doi rcsb
molecule keywords	Penicillin-binding protein 1A (PBP-1a) (PBP1a)
total genus	65
structure length	181
sequence length	187
ec nomenclature	ec 2.4.1.129: Peptidoglycan glycosyltransferase.
pdb deposition date	2007-01-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00912	Transgly	Transglycosylase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3810.10	Mainly Alpha	Orthogonal Bundle	Penicillin binding protein transpeptidase fold	Biosynthetic peptidoglycan transglycosylase-like	2oqoA00

3D3HA 3DWKA 3NB7A 3VMAA 2OLVA 2OQOA 3VMSA 3VMRA 3NB6A 3VMQA 3FWLA 3HZSA 3ZG7B 3VMTA 2OLUA
chains in the Genus database with same CATH superfamily

3D3HA 3DWKA 3NB7A 3VMAA 2OLVA 2OQOA 3VMSA 3VMRA 3NB6A 3VMQA 3FWLA 3HZSA 3ZG7B 3VMTA 2OLUA
chains in the Genus database with same CATH topology

3D3HA 3DWKA 3NB7A 3VMAA 2OLVA 2OQOA 3VMSA 3VMRA 3NB6A 3VMQA 3FWLA 3HZSA 3ZG7B 3VMTA 2OLUA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3D3H A;  3DWK A;  3NB7 A;  3VMA A;  2OLV A;  2OQO A;  3VMS A;  3VMR A;  3NB6 A;  3VMQ A;  3FWL A;  3HZS A;  3ZG7 B;  3VMT A;  2OLU A; 
#chains in the Genus database with same CATH topology
 3D3H A;  3DWK A;  3NB7 A;  3VMA A;  2OLV A;  2OQO A;  3VMS A;  3VMR A;  3NB6 A;  3VMQ A;  3FWL A;  3HZS A;  3ZG7 B;  3VMT A;  2OLU A; 
#chains in the Genus database with same CATH homology
 3D3H A;  3DWK A;  3NB7 A;  3VMA A;  2OLV A;  2OQO A;  3VMS A;  3VMR A;  3NB6 A;  3VMQ A;  3FWL A;  3HZS A;  3ZG7 B;  3VMT A;  2OLU A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2OQOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations