2UXBR

Crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna gggu in the context of the thermus thermophilus 30s subunit.
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
publication title Structures of tRNAs with an expanded anticodon loop in the decoding center of the 30S ribosomal subunit.
pubmed doi rcsb
total genus 14
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 2uxbR00
5BR8R 2VQER 4LFAR 1HNZR 1N33R 4DR3R 1HR0R 4DR4R 4X65R 2UUAR 4DV1R 3T1YR 4NXMR 4X64R 1N32R 1XMQR 1FKAR 4AQYR 4DR6R 4OX9R 4B3TR 1N36R 4DUZR 2UXDR 4GKJR 4DR1R 4JI7R 4DR7R 4JI0R 1IBMR 4DR5R 1XNRR 4JI3R 4DR2R 4JI4R 4JYAR 4B3RR 2UXBR 2UUBR 2ZM6R 5LMUR 4JV5R 1HNWR 4LF7R 1G1XC 2UUCR 4LF5R 1IBKR 4JI1R 4DV5R 4DV4R 2UU9R 4DV7R 4B3SR 4DUYR 3T1HR 4GKKR 1XMOR 1N34R 4YY3R 5LMNR 4DV0R 4JI8R 4K0KR 1HNXR 4DV2R 2F4VR 2E5LR 4YHHR 4LFCR 4NXNR 1I94R 4B3MR 4LF9R 4LF6R 4KHPR 4LF8R 4JI5R 2HHHR 4DV3R 4JI6R 1FJGR 1J5ER 4DV6R 4LF4R 4X62R 1XNQR 2VQFR 2UXCR 4LFBR 4X66R 4JI2R 3OTOR 1IBLR
chains in the Genus database with same CATH superfamily
5BR8R 2VQER 4LFAR 1HNZR 1N33R 4DR3R 1HR0R 4DR4R 4X65R 2UUAR 4DV1R 3T1YR 4NXMR 4X64R 1N32R 1XMQR 1FKAR 4AQYR 4DR6R 4OX9R 4B3TR 1N36R 4DUZR 2UXDR 4GKJR 4DR1R 4JI7R 4DR7R 4JI0R 1IBMR 4DR5R 1XNRR 4JI3R 4DR2R 4JI4R 4JYAR 4B3RR 2UXBR 2UUBR 2ZM6R 5LMUR 4JV5R 1HNWR 4LF7R 1G1XC 2UUCR 4LF5R 1IBKR 4JI1R 4DV5R 4DV4R 2UU9R 4DV7R 4B3SR 4DUYR 3T1HR 4GKKR 1XMOR 1N34R 4YY3R 5LMNR 4DV0R 4JI8R 4K0KR 1HNXR 4DV2R 2F4VR 2E5LR 4YHHR 4LFCR 4NXNR 1I94R 4B3MR 4LF9R 4LF6R 4KHPR 4LF8R 4JI5R 2HHHR 4DV3R 4JI6R 1FJGR 1J5ER 4DV6R 4LF4R 4X62R 1XNQR 2VQFR 2UXCR 4LFBR 4X66R 4JI2R 3OTOR 1IBLR
chains in the Genus database with same CATH topology
5BR8R 2VQER 4LFAR 1HNZR 1N33R 4DR3R 1HR0R 4DR4R 4X65R 2UUAR 4DV1R 3T1YR 4NXMR 4X64R 1N32R 1XMQR 1FKAR 4AQYR 4DR6R 4OX9R 4B3TR 1N36R 4DUZR 2UXDR 4GKJR 4DR1R 4JI7R 4DR7R 4JI0R 1IBMR 4DR5R 1XNRR 4JI3R 4DR2R 4JI4R 4JYAR 4B3RR 2UXBR 2UUBR 2ZM6R 5LMUR 4JV5R 1HNWR 4LF7R 1G1XC 2UUCR 4LF5R 1IBKR 4JI1R 4DV5R 4DV4R 2UU9R 4DV7R 4B3SR 4DUYR 3T1HR 4GKKR 1XMOR 1N34R 4YY3R 5LMNR 4DV0R 4JI8R 4K0KR 1HNXR 4DV2R 2F4VR 2E5LR 4YHHR 4LFCR 4NXNR 1I94R 4B3MR 4LF9R 4LF6R 4KHPR 4LF8R 4JI5R 2HHHR 4DV3R 4JI6R 1FJGR 1J5ER 4DV6R 4LF4R 4X62R 1XNQR 2VQFR 2UXCR 4LFBR 4X66R 4JI2R 3OTOR 1IBLR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BR8 R;  2VQE R;  4LFA R;  1HNZ R;  1N33 R;  4DR3 R;  1HR0 R;  4DR4 R;  4X65 R;  2UUA R;  4DV1 R;  3T1Y R;  4NXM R;  4X64 R;  1N32 R;  1XMQ R;  1FKA R;  4AQY R;  4DR6 R;  4OX9 R;  4B3T R;  1N36 R;  4DUZ R;  2UXD R;  4GKJ R;  4DR1 R;  4JI7 R;  4DR7 R;  4JI0 R;  1IBM R;  4DR5 R;  1XNR R;  4JI3 R;  4DR2 R;  4JI4 R;  4JYA R;  4B3R R;  2UXB R;  2UUB R;  2ZM6 R;  5LMU R;  4JV5 R;  1HNW R;  4LF7 R;  1G1X C;  2UUC R;  4LF5 R;  1IBK R;  4JI1 R;  4DV5 R;  4DV4 R;  2UU9 R;  4DV7 R;  4B3S R;  4DUY R;  3T1H R;  4GKK R;  1XMO R;  1N34 R;  4YY3 R;  5LMN R;  4DV0 R;  4JI8 R;  4K0K R;  1HNX R;  4DV2 R;  2F4V R;  2E5L R;  4YHH R;  4LFC R;  4NXN R;  1I94 R;  4B3M R;  4LF9 R;  4LF6 R;  4KHP R;  4LF8 R;  4JI5 R;  2HHH R;  4DV3 R;  4JI6 R;  1FJG R;  1J5E R;  4DV6 R;  4LF4 R;  4X62 R;  1XNQ R;  2VQF R;  2UXC R;  4LFB R;  4X66 R;  4JI2 R;  3OTO R;  1IBL R; 
#chains in the Genus database with same CATH topology
 5BR8 R;  2VQE R;  4LFA R;  1HNZ R;  1N33 R;  4DR3 R;  1HR0 R;  4DR4 R;  4X65 R;  2UUA R;  4DV1 R;  3T1Y R;  4NXM R;  4X64 R;  1N32 R;  1XMQ R;  1FKA R;  4AQY R;  4DR6 R;  4OX9 R;  4B3T R;  1N36 R;  4DUZ R;  2UXD R;  4GKJ R;  4DR1 R;  4JI7 R;  4DR7 R;  4JI0 R;  1IBM R;  4DR5 R;  1XNR R;  4JI3 R;  4DR2 R;  4JI4 R;  4JYA R;  4B3R R;  2UXB R;  2UUB R;  2ZM6 R;  5LMU R;  4JV5 R;  1HNW R;  4LF7 R;  1G1X C;  2UUC R;  4LF5 R;  1IBK R;  4JI1 R;  4DV5 R;  4DV4 R;  2UU9 R;  4DV7 R;  4B3S R;  4DUY R;  3T1H R;  4GKK R;  1XMO R;  1N34 R;  4YY3 R;  5LMN R;  4DV0 R;  4JI8 R;  4K0K R;  1HNX R;  4DV2 R;  2F4V R;  2E5L R;  4YHH R;  4LFC R;  4NXN R;  1I94 R;  4B3M R;  4LF9 R;  4LF6 R;  4KHP R;  4LF8 R;  4JI5 R;  2HHH R;  4DV3 R;  4JI6 R;  1FJG R;  1J5E R;  4DV6 R;  4LF4 R;  4X62 R;  1XNQ R;  2VQF R;  2UXC R;  4LFB R;  4X66 R;  4JI2 R;  3OTO R;  1IBL R; 
#chains in the Genus database with same CATH homology
 5BR8 R;  2VQE R;  4LFA R;  1HNZ R;  1N33 R;  4DR3 R;  1HR0 R;  4DR4 R;  4X65 R;  2UUA R;  4DV1 R;  3T1Y R;  4NXM R;  4X64 R;  1N32 R;  1XMQ R;  1FKA R;  4AQY R;  4DR6 R;  4OX9 R;  4B3T R;  1N36 R;  4DUZ R;  2UXD R;  4GKJ R;  4DR1 R;  4JI7 R;  4DR7 R;  4JI0 R;  1IBM R;  4DR5 R;  1XNR R;  4JI3 R;  4DR2 R;  4JI4 R;  4JYA R;  4B3R R;  2UXB R;  2UUB R;  2ZM6 R;  5LMU R;  4JV5 R;  1HNW R;  4LF7 R;  1G1X C;  2UUC R;  4LF5 R;  1IBK R;  4JI1 R;  4DV5 R;  4DV4 R;  2UU9 R;  4DV7 R;  4B3S R;  4DUY R;  3T1H R;  4GKK R;  1XMO R;  1N34 R;  4YY3 R;  5LMN R;  4DV0 R;  4JI8 R;  4K0K R;  1HNX R;  4DV2 R;  2F4V R;  2E5L R;  4YHH R;  4LFC R;  4NXN R;  1I94 R;  4B3M R;  4LF9 R;  4LF6 R;  4KHP R;  4LF8 R;  4JI5 R;  2HHH R;  4DV3 R;  4JI6 R;  1FJG R;  1J5E R;  4DV6 R;  4LF4 R;  4X62 R;  1XNQ R;  2VQF R;  2UXC R;  4LFB R;  4X66 R;  4JI2 R;  3OTO R;  1IBL R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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