2VUSI

Crystal structure of unliganded nmra-area zinc finger complex
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
42
structure length
42
Chain Sequence
TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
source organism Emericella nidulans
publication title Structural Analysis of the Recognition of the Negative Regulator Nmra and DNA by the Zinc Finger from the Gata-Type Transcription Factor Area.
pubmed doi rcsb
molecule keywords NITROGEN METABOLITE REPRESSION REGULATOR NMRA
total genus 7
structure length 42
sequence length 42
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature
pdb deposition date 2008-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00320 GATA GATA zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 2vusI00
3DZYA 2GATA 1R4IA 1GAUA 3G6TA 4AA6A 1YNWA 1CITA 5E6BA 5E6AA 5E69A 4CN5A 1DSZB 1R4OA 5EMPA 5EMCA 3G6UA 3G9MA 5CC1A 3G97A 1R0NA 4ONDA 4CN3D 4CN3A 3FYLA 2HANA 6GATA 1GDCA 3CBBA 3VD6C 4TMAI 2VUSI 2C7AA 1HCQA 3DZUD 1DSZA 3DZUA 1LV3A 3G8UA 1GLUA 2M9WA 5CBXA 4OORA 1R0OB 1GNFA 4HN5A 3G9IA 2ENVA 4HN6A 2A66A 4OLNA 4HCAA 4CN2C 1KB6A 4IQRA 2NLLB 5CBZA 3GATA 3G6QA 1HCPA 1R0OA 1GATA 5EMQA 1BY4A 2VUTI 2NLLA 1HRAA 4NQAB 3G99A 1KB4A 1A6YA 2EBLA 4CN7A 3G9PA 2VUUI 3G9JA 1LO1A 3M9EA 3G6RA 5L0MA 4HC9A 5CBYA 2KAEA 2GDAA 3E00D 1R4RA 3E00A 1HLZA 3DFXA 4GATA 7GATA 1LATA 1RXRA 1YNWB 5E6CA 5CC0A 2FF0A 3G6PA 3DFVC 3VEKC 5GATA 5KRBB 3G9OA 3G8XA 4HC7A 1RGDA 1GA5A 1R0NB 4TNTA 4OV7A 5E6DA 2HANB 1KB2A 3DZYD
chains in the Genus database with same CATH superfamily
3DZYA 2GATA 1R4IA 1GAUA 3G6TA 4AA6A 1YNWA 1CITA 5E6BA 5E6AA 5E69A 4CN5A 1DSZB 1R4OA 5EMPA 5EMCA 3G6UA 3G9MA 5CC1A 3G97A 1R0NA 4ONDA 4CN3D 4CN3A 3FYLA 2HANA 6GATA 1GDCA 3CBBA 3VD6C 4TMAI 2VUSI 2C7AA 1HCQA 3DZUD 1DSZA 3DZUA 1LV3A 3G8UA 1GLUA 2DS5A 2M9WA 5CBXA 4OORA 1R0OB 1GNFA 4HN5A 3G9IA 2ENVA 3G27A 4HN6A 2A66A 2DS6A 4OLNA 4HCAA 4CN2C 1KB6A 4IQRA 2NLLB 5CBZA 3GATA 3G6QA 1HCPA 1R0OA 2DS8A 1GATA 5EMQA 1BY4A 2VUTI 2NLLA 1HRAA 4NQAB 3G99A 1KB4A 1A6YA 2EBLA 4CN7A 3G9PA 2VUUI 3G9JA 1LO1A 3M9EA 3G6RA 5L0MA 4HC9A 5CBYA 2KAEA 2GDAA 3E00D 1R4RA 3E00A 1HLZA 3DFXA 4GATA 7GATA 1LATA 1RXRA 1YNWB 5E6CA 5CC0A 2FF0A 3G6PA 3DFVC 3VEKC 5GATA 5KRBB 3G9OA 3G8XA 4HC7A 1RGDA 1GA5A 1R0NB 4TNTA 4OV7A 5E6DA 2HANB 1KB2A 3DZYD
chains in the Genus database with same CATH topology
3DZYA 2GATA 1R4IA 1GAUA 3G6TA 4AA6A 1YNWA 1CITA 5E6BA 5E6AA 5E69A 4CN5A 1DSZB 1R4OA 5EMPA 5EMCA 3G6UA 3G9MA 5CC1A 3G97A 1R0NA 4ONDA 4CN3D 4CN3A 3FYLA 2HANA 6GATA 1GDCA 3CBBA 3VD6C 4TMAI 2VUSI 2C7AA 1HCQA 3DZUD 1DSZA 3DZUA 1LV3A 3G8UA 1GLUA 2M9WA 5CBXA 4OORA 1R0OB 1GNFA 4HN5A 3G9IA 2ENVA 4HN6A 2A66A 4OLNA 4HCAA 4CN2C 1KB6A 4IQRA 2NLLB 5CBZA 3GATA 3G6QA 1HCPA 1R0OA 1GATA 5EMQA 1BY4A 2VUTI 2NLLA 1HRAA 4NQAB 3G99A 1KB4A 1A6YA 2EBLA 4CN7A 3G9PA 2VUUI 3G9JA 1LO1A 3M9EA 3G6RA 5L0MA 4HC9A 5CBYA 2KAEA 2GDAA 3E00D 1R4RA 3E00A 1HLZA 3DFXA 4GATA 7GATA 1LATA 1RXRA 1YNWB 5E6CA 5CC0A 2FF0A 3G6PA 3DFVC 3VEKC 5GATA 5KRBB 3G9OA 3G8XA 4HC7A 1RGDA 1GA5A 1R0NB 4TNTA 4OV7A 5E6DA 2HANB 1KB2A 3DZYD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DZY A;  2GAT A;  1R4I A;  1GAU A;  3G6T A;  4AA6 A;  1YNW A;  1CIT A;  5E6B A;  5E6A A;  5E69 A;  4CN5 A;  1DSZ B;  1R4O A;  5EMP A;  5EMC A;  3G6U A;  3G9M A;  5CC1 A;  3G97 A;  1R0N A;  4OND A;  4CN3 D;  4CN3 A;  3FYL A;  2HAN A;  6GAT A;  1GDC A;  3CBB A;  3VD6 C;  4TMA I;  2VUS I;  2C7A A;  1HCQ A;  3DZU D;  1DSZ A;  3DZU A;  1LV3 A;  3G8U A;  1GLU A;  2M9W A;  5CBX A;  4OOR A;  1R0O B;  1GNF A;  4HN5 A;  3G9I A;  2ENV A;  4HN6 A;  2A66 A;  4OLN A;  4HCA A;  4CN2 C;  1KB6 A;  4IQR A;  2NLL B;  5CBZ A;  3GAT A;  3G6Q A;  1HCP A;  1R0O A;  1GAT A;  5EMQ A;  1BY4 A;  2VUT I;  2NLL A;  1HRA A;  4NQA B;  3G99 A;  1KB4 A;  1A6Y A;  2EBL A;  4CN7 A;  3G9P A;  2VUU I;  3G9J A;  1LO1 A;  3M9E A;  3G6R A;  5L0M A;  4HC9 A;  5CBY A;  2KAE A;  2GDA A;  3E00 D;  1R4R A;  3E00 A;  1HLZ A;  3DFX A;  4GAT A;  7GAT A;  1LAT A;  1RXR A;  1YNW B;  5E6C A;  5CC0 A;  2FF0 A;  3G6P A;  3DFV C;  3VEK C;  5GAT A;  5KRB B;  3G9O A;  3G8X A;  4HC7 A;  1RGD A;  1GA5 A;  1R0N B;  4TNT A;  4OV7 A;  5E6D A;  2HAN B;  1KB2 A;  3DZY D; 
#chains in the Genus database with same CATH topology
 3DZY A;  2GAT A;  1R4I A;  1GAU A;  3G6T A;  4AA6 A;  1YNW A;  1CIT A;  5E6B A;  5E6A A;  5E69 A;  4CN5 A;  1DSZ B;  1R4O A;  5EMP A;  5EMC A;  3G6U A;  3G9M A;  5CC1 A;  3G97 A;  1R0N A;  4OND A;  4CN3 D;  4CN3 A;  3FYL A;  2HAN A;  6GAT A;  1GDC A;  3CBB A;  3VD6 C;  4TMA I;  2VUS I;  2C7A A;  1HCQ A;  3DZU D;  1DSZ A;  3DZU A;  1LV3 A;  3G8U A;  1GLU A;  2DS5 A;  2M9W A;  5CBX A;  4OOR A;  1R0O B;  1GNF A;  4HN5 A;  3G9I A;  2ENV A;  3G27 A;  4HN6 A;  2A66 A;  2DS6 A;  4OLN A;  4HCA A;  4CN2 C;  1KB6 A;  4IQR A;  2NLL B;  5CBZ A;  3GAT A;  3G6Q A;  1HCP A;  1R0O A;  2DS8 A;  1GAT A;  5EMQ A;  1BY4 A;  2VUT I;  2NLL A;  1HRA A;  4NQA B;  3G99 A;  1KB4 A;  1A6Y A;  2EBL A;  4CN7 A;  3G9P A;  2VUU I;  3G9J A;  1LO1 A;  3M9E A;  3G6R A;  5L0M A;  4HC9 A;  5CBY A;  2KAE A;  2GDA A;  3E00 D;  1R4R A;  3E00 A;  1HLZ A;  3DFX A;  4GAT A;  7GAT A;  1LAT A;  1RXR A;  1YNW B;  5E6C A;  5CC0 A;  2FF0 A;  3G6P A;  3DFV C;  3VEK C;  5GAT A;  5KRB B;  3G9O A;  3G8X A;  4HC7 A;  1RGD A;  1GA5 A;  1R0N B;  4TNT A;  4OV7 A;  5E6D A;  2HAN B;  1KB2 A;  3DZY D; 
#chains in the Genus database with same CATH homology
 3DZY A;  2GAT A;  1R4I A;  1GAU A;  3G6T A;  4AA6 A;  1YNW A;  1CIT A;  5E6B A;  5E6A A;  5E69 A;  4CN5 A;  1DSZ B;  1R4O A;  5EMP A;  5EMC A;  3G6U A;  3G9M A;  5CC1 A;  3G97 A;  1R0N A;  4OND A;  4CN3 D;  4CN3 A;  3FYL A;  2HAN A;  6GAT A;  1GDC A;  3CBB A;  3VD6 C;  4TMA I;  2VUS I;  2C7A A;  1HCQ A;  3DZU D;  1DSZ A;  3DZU A;  1LV3 A;  3G8U A;  1GLU A;  2M9W A;  5CBX A;  4OOR A;  1R0O B;  1GNF A;  4HN5 A;  3G9I A;  2ENV A;  4HN6 A;  2A66 A;  4OLN A;  4HCA A;  4CN2 C;  1KB6 A;  4IQR A;  2NLL B;  5CBZ A;  3GAT A;  3G6Q A;  1HCP A;  1R0O A;  1GAT A;  5EMQ A;  1BY4 A;  2VUT I;  2NLL A;  1HRA A;  4NQA B;  3G99 A;  1KB4 A;  1A6Y A;  2EBL A;  4CN7 A;  3G9P A;  2VUU I;  3G9J A;  1LO1 A;  3M9E A;  3G6R A;  5L0M A;  4HC9 A;  5CBY A;  2KAE A;  2GDA A;  3E00 D;  1R4R A;  3E00 A;  1HLZ A;  3DFX A;  4GAT A;  7GAT A;  1LAT A;  1RXR A;  1YNW B;  5E6C A;  5CC0 A;  2FF0 A;  3G6P A;  3DFV C;  3VEK C;  5GAT A;  5KRB B;  3G9O A;  3G8X A;  4HC7 A;  1RGD A;  1GA5 A;  1R0N B;  4TNT A;  4OV7 A;  5E6D A;  2HAN B;  1KB2 A;  3DZY D; 
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