2VUU | Genus

Total Genus 6

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	6
sequence length	42
structure length	42
Chain Sequence	TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transcription
source organism	Emericella nidulans
publication title	Structural Analysis of the Recognition of the Negative Regulator Nmra and DNA by the Zinc Finger from the Gata-Type Transcription Factor Area. pubmed doi rcsb
molecule keywords	NITROGEN METABOLITE REPRESSION REGULATOR NMRA
total genus	6
structure length	42
sequence length	42
chains with identical sequence	J, K, L, M, N, O, P
ec nomenclature
pdb deposition date	2008-05-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
I	PF00320	GATA	GATA zinc finger

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	2vuuI00

1R4OA 1R0NA 2A66A 1R0OB 2C7AA 2M9WA 5CC0A 4HCAA 2HANA 1R0NB 3DZYD 1YNWA 6GATA 3DZYA 2HANB 1GDCA 3G9OA 5CBZA 4HN6A 1YNWB 1GATA 1HCQA 5KRBB 3G97A 1GLUA 1GNFA 5E6CA 3G6UA 1R0OA 1R4RA 4HC7A 4CN3D 4TNTA 3G6PA 5CBXA 5CC1A 3CBBA 4NQAB 1GA5A 3G9MA 2GATA 2NLLB 2VUUI 4CN2C 4AA6A 5EMQA 4HC9A 2VUTI 2ENVA 3DZUD 1KB6A 3FYLA 2GDAA 1LV3A 4ONDA 3G8UA 4CN5A 2VUSI 1KB2A 1KB4A 4CN3A 1HLZA 1BY4A 5CBYA 2FF0A 3G99A 2NLLA 3G6RA 3DFVC 3GATA 5EMCA 3G6TA 3VD6C 1A6YA 5E6BA 1RGDA 1DSZB 3G9JA 2KAEA 3G9IA 5E69A 7GATA 3DZUA 1HCPA 1R4IA 2EBLA 4GATA 1RXRA 4OLNA 4HN5A 1HRAA 1GAUA 5GATA 5E6AA 1DSZA 5E6DA 1LO1A 4CN7A 4OV7A 5EMPA 3M9EA 3G9PA 3E00D 1CITA 5L0MA 4TMAI 3DFXA 3E00A 4OORA 1LATA 3G8XA 3VEKC 3G6QA 4IQRA
chains in the Genus database with same CATH superfamily

1R4OA 2DS6A 1R0NA 2A66A 1R0OB 2C7AA 2M9WA 5CC0A 4HCAA 2HANA 1R0NB 3DZYD 1YNWA 6GATA 3DZYA 2HANB 1GDCA 3G9OA 5CBZA 4HN6A 1YNWB 1GATA 1HCQA 5KRBB 2DS8A 3G97A 1GLUA 1GNFA 5E6CA 3G6UA 1R0OA 4HC7A 1R4RA 4CN3D 4TNTA 3G6PA 5CBXA 5CC1A 3CBBA 4NQAB 1GA5A 3G9MA 2GATA 2NLLB 2VUUI 4CN2C 4AA6A 5EMQA 4HC9A 2VUTI 2ENVA 3DZUD 1KB6A 3FYLA 2GDAA 1LV3A 4ONDA 3G8UA 4CN5A 2VUSI 1KB2A 1KB4A 4CN3A 1HLZA 1BY4A 5CBYA 2FF0A 3G99A 2NLLA 3G6RA 3DFVC 3GATA 5EMCA 3G6TA 3VD6C 1A6YA 5E6BA 1RGDA 1DSZB 3G9JA 2KAEA 3G9IA 5E69A 7GATA 3DZUA 1HCPA 1R4IA 2EBLA 4GATA 1RXRA 4OLNA 4HN5A 1HRAA 1GAUA 5GATA 5E6AA 1DSZA 5E6DA 2DS5A 4CN7A 1LO1A 4OV7A 5EMPA 3M9EA 3G9PA 3E00D 1CITA 5L0MA 4TMAI 3DFXA 3E00A 4OORA 1LATA 3G8XA 3VEKC 3G6QA 4IQRA 3G27A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1R4O A;  1R0N A;  2A66 A;  1R0O B;  2C7A A;  2M9W A;  5CC0 A;  4HCA A;  2HAN A;  1R0N B;  3DZY D;  1YNW A;  6GAT A;  3DZY A;  2HAN B;  1GDC A;  3G9O A;  5CBZ A;  4HN6 A;  1YNW B;  1GAT A;  1HCQ A;  5KRB B;  3G97 A;  1GLU A;  1GNF A;  5E6C A;  3G6U A;  1R0O A;  1R4R A;  4HC7 A;  4CN3 D;  4TNT A;  3G6P A;  5CBX A;  5CC1 A;  3CBB A;  4NQA B;  1GA5 A;  3G9M A;  2GAT A;  2NLL B;  2VUU I;  4CN2 C;  4AA6 A;  5EMQ A;  4HC9 A;  2VUT I;  2ENV A;  3DZU D;  1KB6 A;  3FYL A;  2GDA A;  1LV3 A;  4OND A;  3G8U A;  4CN5 A;  2VUS I;  1KB2 A;  1KB4 A;  4CN3 A;  1HLZ A;  1BY4 A;  5CBY A;  2FF0 A;  3G99 A;  2NLL A;  3G6R A;  3DFV C;  3GAT A;  5EMC A;  3G6T A;  3VD6 C;  1A6Y A;  5E6B A;  1RGD A;  1DSZ B;  3G9J A;  2KAE A;  3G9I A;  5E69 A;  7GAT A;  3DZU A;  1HCP A;  1R4I A;  2EBL A;  4GAT A;  1RXR A;  4OLN A;  4HN5 A;  1HRA A;  1GAU A;  5GAT A;  5E6A A;  1DSZ A;  5E6D A;  1LO1 A;  4CN7 A;  4OV7 A;  5EMP A;  3M9E A;  3G9P A;  3E00 D;  1CIT A;  5L0M A;  4TMA I;  3DFX A;  3E00 A;  4OOR A;  1LAT A;  3G8X A;  3VEK C;  3G6Q A;  4IQR A; 
#chains in the Genus database with same CATH topology
 1R4O A;  2DS6 A;  1R0N A;  2A66 A;  1R0O B;  2C7A A;  2M9W A;  5CC0 A;  4HCA A;  2HAN A;  1R0N B;  3DZY D;  1YNW A;  6GAT A;  3DZY A;  2HAN B;  1GDC A;  3G9O A;  5CBZ A;  4HN6 A;  1YNW B;  1GAT A;  1HCQ A;  5KRB B;  2DS8 A;  3G97 A;  1GLU A;  1GNF A;  5E6C A;  3G6U A;  1R0O A;  4HC7 A;  1R4R A;  4CN3 D;  4TNT A;  3G6P A;  5CBX A;  5CC1 A;  3CBB A;  4NQA B;  1GA5 A;  3G9M A;  2GAT A;  2NLL B;  2VUU I;  4CN2 C;  4AA6 A;  5EMQ A;  4HC9 A;  2VUT I;  2ENV A;  3DZU D;  1KB6 A;  3FYL A;  2GDA A;  1LV3 A;  4OND A;  3G8U A;  4CN5 A;  2VUS I;  1KB2 A;  1KB4 A;  4CN3 A;  1HLZ A;  1BY4 A;  5CBY A;  2FF0 A;  3G99 A;  2NLL A;  3G6R A;  3DFV C;  3GAT A;  5EMC A;  3G6T A;  3VD6 C;  1A6Y A;  5E6B A;  1RGD A;  1DSZ B;  3G9J A;  2KAE A;  3G9I A;  5E69 A;  7GAT A;  3DZU A;  1HCP A;  1R4I A;  2EBL A;  4GAT A;  1RXR A;  4OLN A;  4HN5 A;  1HRA A;  1GAU A;  5GAT A;  5E6A A;  1DSZ A;  5E6D A;  2DS5 A;  4CN7 A;  1LO1 A;  4OV7 A;  5EMP A;  3M9E A;  3G9P A;  3E00 D;  1CIT A;  5L0M A;  4TMA I;  3DFX A;  3E00 A;  4OOR A;  1LAT A;  3G8X A;  3VEK C;  3G6Q A;  4IQR A;  3G27 A; 
#chains in the Genus database with same CATH homology
 1R4O A;  1R0N A;  2A66 A;  1R0O B;  2C7A A;  2M9W A;  5CC0 A;  4HCA A;  2HAN A;  1R0N B;  3DZY D;  1YNW A;  6GAT A;  3DZY A;  2HAN B;  1GDC A;  3G9O A;  5CBZ A;  4HN6 A;  1YNW B;  1GAT A;  1HCQ A;  5KRB B;  3G97 A;  1GLU A;  1GNF A;  5E6C A;  3G6U A;  1R0O A;  1R4R A;  4HC7 A;  4CN3 D;  4TNT A;  3G6P A;  5CBX A;  5CC1 A;  3CBB A;  4NQA B;  1GA5 A;  3G9M A;  2GAT A;  2NLL B;  2VUU I;  4CN2 C;  4AA6 A;  5EMQ A;  4HC9 A;  2VUT I;  2ENV A;  3DZU D;  1KB6 A;  3FYL A;  2GDA A;  1LV3 A;  4OND A;  3G8U A;  4CN5 A;  2VUS I;  1KB2 A;  1KB4 A;  4CN3 A;  1HLZ A;  1BY4 A;  5CBY A;  2FF0 A;  3G99 A;  2NLL A;  3G6R A;  3DFV C;  3GAT A;  5EMC A;  3G6T A;  3VD6 C;  1A6Y A;  5E6B A;  1RGD A;  1DSZ B;  3G9J A;  2KAE A;  3G9I A;  5E69 A;  7GAT A;  3DZU A;  1HCP A;  1R4I A;  2EBL A;  4GAT A;  1RXR A;  4OLN A;  4HN5 A;  1HRA A;  1GAU A;  5GAT A;  5E6A A;  1DSZ A;  5E6D A;  1LO1 A;  4CN7 A;  4OV7 A;  5EMP A;  3M9E A;  3G9P A;  3E00 D;  1CIT A;  5L0M A;  4TMA I;  3DFX A;  3E00 A;  4OOR A;  1LAT A;  3G8X A;  3VEK C;  3G6Q A;  4IQR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2VUUI

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations