3DFXA

Opposite gata dna binding
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
58
structure length
58
Chain Sequence
SAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/dna
source organism Mus musculus
publication title Crystal structures of multiple GATA zinc fingers bound to DNA reveal new insights into DNA recognition and self-association by GATA.
pubmed doi rcsb
molecule keywords DNA (5'-D(*DTP*DTP*DGP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DGP*D
total genus 7
structure length 58
sequence length 58
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00320 GATA GATA zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 3dfxA00
1LATA 2ENVA 1KB6A 2FF0A 1R4OA 4HC9A 5EMQA 5CC0A 5CBZA 2C7AA 5CC1A 1KB2A 3DZUD 2A66A 1YNWA 3G8XA 1A6YA 3E00D 2VUTI 3G9JA 2EBLA 4CN2C 4NQAB 3DFVC 3CBBA 3M9EA 1GNFA 4CN5A 1R4RA 3G6PA 4OV7A 4OLNA 3G99A 1BY4A 5E6CA 5E69A 2GATA 2GDAA 3DZYD 5E6DA 4TNTA 3DZUA 2NLLA 1GDCA 4GATA 3DFXA 4ONDA 4HCAA 5EMPA 3E00A 3G8UA 1HRAA 5GATA 4CN7A 1YNWB 4HC7A 3G97A 3GATA 2VUSI 2HANA 5KRBB 1R0OA 4AA6A 3G6UA 2KAEA 1R0NA 3G6RA 4TMAI 1HCPA 2M9WA 5CBYA 3G9IA 1KB4A 6GATA 3DZYA 1RGDA 1DSZA 3VD6C 1GAUA 4CN3D 1GATA 4OORA 1LV3A 4HN6A 3G6TA 1LO1A 2VUUI 1GA5A 1GLUA 2NLLB 5E6BA 3VEKC 1HCQA 5CBXA 3G9MA 1CITA 5EMCA 2HANB 7GATA 5L0MA 1R0OB 3FYLA 1R0NB 1RXRA 1HLZA 4HN5A 1R4IA 4IQRA 3G6QA 4CN3A 1DSZB 5E6AA 3G9OA 3G9PA
chains in the Genus database with same CATH superfamily
1LATA 2ENVA 1KB6A 2FF0A 1R4OA 4HC9A 5EMQA 5CC0A 5CBZA 2C7AA 5CC1A 1KB2A 3DZUD 2A66A 1YNWA 3G8XA 1A6YA 3E00D 2VUTI 3G9JA 2EBLA 4CN2C 4NQAB 3DFVC 3CBBA 3M9EA 1GNFA 4CN5A 1R4RA 3G6PA 4OV7A 4OLNA 3G99A 1BY4A 5E6CA 5E69A 2GATA 2GDAA 3DZYD 5E6DA 4TNTA 3DZUA 2NLLA 1GDCA 4GATA 3DFXA 4ONDA 4HCAA 5EMPA 3E00A 3G8UA 1HRAA 5GATA 4CN7A 1YNWB 4HC7A 3G97A 3GATA 2VUSI 2HANA 5KRBB 1R0OA 4AA6A 3G6UA 2KAEA 1R0NA 3G6RA 4TMAI 1HCPA 2M9WA 5CBYA 2DS5A 3G9IA 1KB4A 6GATA 3DZYA 1RGDA 1DSZA 3VD6C 1GAUA 4CN3D 3G27A 1GATA 4OORA 1LV3A 2DS8A 4HN6A 3G6TA 1LO1A 2VUUI 1GA5A 1GLUA 2NLLB 5E6BA 3VEKC 1HCQA 5CBXA 3G9MA 1CITA 5EMCA 2HANB 7GATA 5L0MA 1R0OB 3FYLA 1R0NB 1RXRA 1HLZA 4HN5A 1R4IA 4IQRA 3G6QA 4CN3A 1DSZB 5E6AA 3G9OA 3G9PA 2DS6A
chains in the Genus database with same CATH topology
1LATA 2ENVA 1KB6A 2FF0A 1R4OA 4HC9A 5EMQA 5CC0A 5CBZA 2C7AA 5CC1A 1KB2A 3DZUD 2A66A 1YNWA 3G8XA 1A6YA 3E00D 2VUTI 3G9JA 2EBLA 4CN2C 4NQAB 3DFVC 3CBBA 3M9EA 1GNFA 4CN5A 1R4RA 3G6PA 4OV7A 4OLNA 3G99A 1BY4A 5E6CA 5E69A 2GATA 2GDAA 3DZYD 5E6DA 4TNTA 3DZUA 2NLLA 1GDCA 4GATA 3DFXA 4ONDA 4HCAA 5EMPA 3E00A 3G8UA 1HRAA 5GATA 4CN7A 1YNWB 4HC7A 3G97A 3GATA 2VUSI 2HANA 5KRBB 1R0OA 4AA6A 3G6UA 2KAEA 1R0NA 3G6RA 4TMAI 1HCPA 2M9WA 5CBYA 3G9IA 1KB4A 6GATA 3DZYA 1RGDA 1DSZA 3VD6C 1GAUA 4CN3D 1GATA 4OORA 1LV3A 4HN6A 3G6TA 1LO1A 2VUUI 1GA5A 1GLUA 2NLLB 5E6BA 3VEKC 1HCQA 5CBXA 3G9MA 1CITA 5EMCA 2HANB 7GATA 5L0MA 1R0OB 3FYLA 1R0NB 1RXRA 1HLZA 4HN5A 1R4IA 4IQRA 3G6QA 4CN3A 1DSZB 5E6AA 3G9OA 3G9PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LAT A;  2ENV A;  1KB6 A;  2FF0 A;  1R4O A;  4HC9 A;  5EMQ A;  5CC0 A;  5CBZ A;  2C7A A;  5CC1 A;  1KB2 A;  3DZU D;  2A66 A;  1YNW A;  3G8X A;  1A6Y A;  3E00 D;  2VUT I;  3G9J A;  2EBL A;  4CN2 C;  4NQA B;  3DFV C;  3CBB A;  3M9E A;  1GNF A;  4CN5 A;  1R4R A;  3G6P A;  4OV7 A;  4OLN A;  3G99 A;  1BY4 A;  5E6C A;  5E69 A;  2GAT A;  2GDA A;  3DZY D;  5E6D A;  4TNT A;  3DZU A;  2NLL A;  1GDC A;  4GAT A;  3DFX A;  4OND A;  4HCA A;  5EMP A;  3E00 A;  3G8U A;  1HRA A;  5GAT A;  4CN7 A;  1YNW B;  4HC7 A;  3G97 A;  3GAT A;  2VUS I;  2HAN A;  5KRB B;  1R0O A;  4AA6 A;  3G6U A;  2KAE A;  1R0N A;  3G6R A;  4TMA I;  1HCP A;  2M9W A;  5CBY A;  3G9I A;  1KB4 A;  6GAT A;  3DZY A;  1RGD A;  1DSZ A;  3VD6 C;  1GAU A;  4CN3 D;  1GAT A;  4OOR A;  1LV3 A;  4HN6 A;  3G6T A;  1LO1 A;  2VUU I;  1GA5 A;  1GLU A;  2NLL B;  5E6B A;  3VEK C;  1HCQ A;  5CBX A;  3G9M A;  1CIT A;  5EMC A;  2HAN B;  7GAT A;  5L0M A;  1R0O B;  3FYL A;  1R0N B;  1RXR A;  1HLZ A;  4HN5 A;  1R4I A;  4IQR A;  3G6Q A;  4CN3 A;  1DSZ B;  5E6A A;  3G9O A;  3G9P A; 
#chains in the Genus database with same CATH topology
 1LAT A;  2ENV A;  1KB6 A;  2FF0 A;  1R4O A;  4HC9 A;  5EMQ A;  5CC0 A;  5CBZ A;  2C7A A;  5CC1 A;  1KB2 A;  3DZU D;  2A66 A;  1YNW A;  3G8X A;  1A6Y A;  3E00 D;  2VUT I;  3G9J A;  2EBL A;  4CN2 C;  4NQA B;  3DFV C;  3CBB A;  3M9E A;  1GNF A;  4CN5 A;  1R4R A;  3G6P A;  4OV7 A;  4OLN A;  3G99 A;  1BY4 A;  5E6C A;  5E69 A;  2GAT A;  2GDA A;  3DZY D;  5E6D A;  4TNT A;  3DZU A;  2NLL A;  1GDC A;  4GAT A;  3DFX A;  4OND A;  4HCA A;  5EMP A;  3E00 A;  3G8U A;  1HRA A;  5GAT A;  4CN7 A;  1YNW B;  4HC7 A;  3G97 A;  3GAT A;  2VUS I;  2HAN A;  5KRB B;  1R0O A;  4AA6 A;  3G6U A;  2KAE A;  1R0N A;  3G6R A;  4TMA I;  1HCP A;  2M9W A;  5CBY A;  2DS5 A;  3G9I A;  1KB4 A;  6GAT A;  3DZY A;  1RGD A;  1DSZ A;  3VD6 C;  1GAU A;  4CN3 D;  3G27 A;  1GAT A;  4OOR A;  1LV3 A;  2DS8 A;  4HN6 A;  3G6T A;  1LO1 A;  2VUU I;  1GA5 A;  1GLU A;  2NLL B;  5E6B A;  3VEK C;  1HCQ A;  5CBX A;  3G9M A;  1CIT A;  5EMC A;  2HAN B;  7GAT A;  5L0M A;  1R0O B;  3FYL A;  1R0N B;  1RXR A;  1HLZ A;  4HN5 A;  1R4I A;  4IQR A;  3G6Q A;  4CN3 A;  1DSZ B;  5E6A A;  3G9O A;  3G9P A;  2DS6 A; 
#chains in the Genus database with same CATH homology
 1LAT A;  2ENV A;  1KB6 A;  2FF0 A;  1R4O A;  4HC9 A;  5EMQ A;  5CC0 A;  5CBZ A;  2C7A A;  5CC1 A;  1KB2 A;  3DZU D;  2A66 A;  1YNW A;  3G8X A;  1A6Y A;  3E00 D;  2VUT I;  3G9J A;  2EBL A;  4CN2 C;  4NQA B;  3DFV C;  3CBB A;  3M9E A;  1GNF A;  4CN5 A;  1R4R A;  3G6P A;  4OV7 A;  4OLN A;  3G99 A;  1BY4 A;  5E6C A;  5E69 A;  2GAT A;  2GDA A;  3DZY D;  5E6D A;  4TNT A;  3DZU A;  2NLL A;  1GDC A;  4GAT A;  3DFX A;  4OND A;  4HCA A;  5EMP A;  3E00 A;  3G8U A;  1HRA A;  5GAT A;  4CN7 A;  1YNW B;  4HC7 A;  3G97 A;  3GAT A;  2VUS I;  2HAN A;  5KRB B;  1R0O A;  4AA6 A;  3G6U A;  2KAE A;  1R0N A;  3G6R A;  4TMA I;  1HCP A;  2M9W A;  5CBY A;  3G9I A;  1KB4 A;  6GAT A;  3DZY A;  1RGD A;  1DSZ A;  3VD6 C;  1GAU A;  4CN3 D;  1GAT A;  4OOR A;  1LV3 A;  4HN6 A;  3G6T A;  1LO1 A;  2VUU I;  1GA5 A;  1GLU A;  2NLL B;  5E6B A;  3VEK C;  1HCQ A;  5CBX A;  3G9M A;  1CIT A;  5EMC A;  2HAN B;  7GAT A;  5L0M A;  1R0O B;  3FYL A;  1R0N B;  1RXR A;  1HLZ A;  4HN5 A;  1R4I A;  4IQR A;  3G6Q A;  4CN3 A;  1DSZ B;  5E6A A;  3G9O A;  3G9P A; 
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