3FCN | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	158
structure length	158
Chain Sequence	EHKTYEADLFVWCQQQADGLRALSRSRRDLPDDLDLEHIAEEIEDMGRSELREATSLVRQICVRVIMAMSAPEAPDRARWRSEVVSWHNLLLDTITPGMIDRIDIGVIWRRAVSEAKAALIEINVAPQAGLSFQAPLPADHFLDEDFDYDATVARLGP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Rhodospirillum rubrum atcc 11170
publication title	Crystal structure of an alpha-helical protein of unknown function (Pfam01724) (YP_428290.1) from RHODOSPIRILLUM RUBRUM ATCC 11170 at 1.45 A resolution rcsb
molecule keywords	an alpha-helical protein of unknown function (Pfam01724)
total genus	56
structure length	158
sequence length	158
ec nomenclature
pdb deposition date	2008-11-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01724	DUF29	Domain of unknown function DUF29

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1220.20	Mainly Alpha	Up-down Bundle	Malate Synthase G; Chain: A; Domain 4	Malate Synthase G; Chain: A; Domain 4	3fcnA00

3FCNA
chains in the Genus database with same CATH superfamily

5C9XA 5CC3A 5CAHA 5E9XA 3CUXA 3S9IA 5DRCA 5C9RA 3FCNA 5C9WA 1N8WA 3SADA 5DX7A 3CV1A 5C9UA 5CC7A 5CCZA 5CEWA 5ECVA 4EX4A 5CBJA 3CV2A 5DRIA 5H8PA 1Y8BA 1D8CA 5H8UA 5CJNA 1P7TA 2JQXA 5H8MA 3SAZA 3CUZA 5T8GA 5CBIA 5CC6A 1P7TB 1N8IA 5CC5A 5C7VA 2GQ3A 5CAKA 3S9ZA 5CBBA 3SB0A 5CJMA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3FCN A; 
#chains in the Genus database with same CATH topology
 5C9X A;  5CC3 A;  5CAH A;  5E9X A;  3CUX A;  3S9I A;  5DRC A;  5C9R A;  3FCN A;  5C9W A;  1N8W A;  3SAD A;  5DX7 A;  3CV1 A;  5C9U A;  5CC7 A;  5CCZ A;  5CEW A;  5ECV A;  4EX4 A;  5CBJ A;  3CV2 A;  5DRI A;  5H8P A;  1Y8B A;  1D8C A;  5H8U A;  5CJN A;  1P7T A;  2JQX A;  5H8M A;  3SAZ A;  3CUZ A;  5T8G A;  5CBI A;  5CC6 A;  1P7T B;  1N8I A;  5CC5 A;  5C7V A;  2GQ3 A;  5CAK A;  3S9Z A;  5CBB A;  3SB0 A;  5CJM A; 
#chains in the Genus database with same CATH homology
 5C9X A;  5CC3 A;  5CAH A;  5E9X A;  3CUX A;  3S9I A;  5DRC A;  5C9R A;  3FCN A;  5C9W A;  1N8W A;  3SAD A;  5DX7 A;  3CV1 A;  5C9U A;  5CC7 A;  5CCZ A;  5CEW A;  5ECV A;  4EX4 A;  5CBJ A;  3CV2 A;  5DRI A;  5H8P A;  1Y8B A;  1D8C A;  5H8U A;  5CJN A;  1P7T A;  2JQX A;  5H8M A;  3SAZ A;  3CUZ A;  5T8G A;  5CBI A;  5CC6 A;  1P7T B;  1N8I A;  5CC5 A;  5C7V A;  2GQ3 A;  5CAK A;  3S9Z A;  5CBB A;  3SB0 A;  5CJM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3FCNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations