3FYLA

Gr dna binding domain:cgt complex
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
74
structure length
74
Chain Sequence
SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title DNA binding site sequence directs glucocorticoid receptor structure and activity.
pubmed doi rcsb
molecule keywords Glucocorticoid receptor
molecule tags Transcription/dna
source organism Rattus norvegicus
total genus 17
structure length 74
sequence length 74
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 3fylA00
4HC9A 3G8UA 5GATA 1DSZA 3DFXA 4OLNA 3G97A 1R4OA 4HCAA 3E00A 1KB6A 3VEKC 2VUSI 3DZUD 3G6UA 1YNWA 1KB2A 1LV3A 5KRBB 3G6PA 3GATA 1R0OB 2HANA 5E6AA 2M9WA 5CBXA 3FYLA 3DFVC 2ENVA 5EMPA 4HN6A 3VD6C 1RGDA 3G99A 4HC7A 5CBZA 7GATA 1CITA 3G9MA 2KAEA 4CN3A 3CBBA 2GATA 2FF0A 1BY4A 4IQRA 1HCPA 3E00D 1RXRA 5E69A 1R0OA 5EMQA 1GAUA 4CN5A 3G6TA 3G9PA 5CC1A 3G9IA 3DZUA 1HCQA 5CBYA 1GNFA 1GA5A 4CN2C 1KB4A 2C7AA 5E6DA 4ONDA 1A6YA 3DZYA 1GDCA 3G9OA 1R0NB 2VUTI 5E6BA 4TNTA 2NLLB 2GDAA 1GATA 4GATA 5CC0A 5L0MA 3G6QA 2EBLA 2A66A 4NQAB 1DSZB 4HN5A 3G8XA 4OV7A 4TMAI 1LATA 3M9EA 1R4RA 1R4IA 1LO1A 3G9JA 2VUUI 1YNWB 1HLZA 4CN7A 6GATA 3G6RA 5EMCA 2HANB 1GLUA 1R0NA 5E6CA 4CN3D 3DZYD 2NLLA 4AA6A 1HRAA 4OORA
chains in the Genus database with same CATH superfamily
4HC9A 3G8UA 2DS6A 5GATA 1DSZA 3DFXA 2DS8A 4OLNA 3G97A 1R4OA 4HCAA 3E00A 1KB6A 3VEKC 2VUSI 3DZUD 3G6UA 1YNWA 2DS5A 1KB2A 1LV3A 5KRBB 3G6PA 3GATA 1R0OB 2HANA 5E6AA 2M9WA 5CBXA 3FYLA 3DFVC 2ENVA 5EMPA 4HN6A 3VD6C 1RGDA 3G99A 4HC7A 5CBZA 7GATA 1CITA 3G9MA 2KAEA 4CN3A 3CBBA 2GATA 2FF0A 1BY4A 3G27A 4IQRA 1HCPA 3E00D 1RXRA 5E69A 1R0OA 5EMQA 1GAUA 4CN5A 3G6TA 3G9PA 5CC1A 3G9IA 3DZUA 1HCQA 5CBYA 1GNFA 1GA5A 4CN2C 1KB4A 2C7AA 5E6DA 4ONDA 1A6YA 3DZYA 1GDCA 3G9OA 1R0NB 2VUTI 5E6BA 4TNTA 2NLLB 2GDAA 1GATA 4GATA 5CC0A 5L0MA 3G6QA 2EBLA 2A66A 4NQAB 1DSZB 4HN5A 3G8XA 4OV7A 4TMAI 1LATA 3M9EA 1R4RA 1R4IA 1LO1A 3G9JA 2VUUI 1YNWB 1HLZA 4CN7A 6GATA 3G6RA 5EMCA 2HANB 1GLUA 1R0NA 5E6CA 4CN3D 3DZYD 2NLLA 4AA6A 1HRAA 4OORA
chains in the Genus database with same CATH topology
4HC9A 3G8UA 5GATA 1DSZA 3DFXA 4OLNA 3G97A 1R4OA 4HCAA 3E00A 1KB6A 3VEKC 2VUSI 3DZUD 3G6UA 1YNWA 1KB2A 1LV3A 5KRBB 3G6PA 3GATA 1R0OB 2HANA 5E6AA 2M9WA 5CBXA 3FYLA 3DFVC 2ENVA 5EMPA 4HN6A 3VD6C 1RGDA 3G99A 4HC7A 5CBZA 7GATA 1CITA 3G9MA 2KAEA 4CN3A 3CBBA 2GATA 2FF0A 1BY4A 4IQRA 1HCPA 3E00D 1RXRA 5E69A 1R0OA 5EMQA 1GAUA 4CN5A 3G6TA 3G9PA 5CC1A 3G9IA 3DZUA 1HCQA 5CBYA 1GNFA 1GA5A 4CN2C 1KB4A 2C7AA 5E6DA 4ONDA 1A6YA 3DZYA 1GDCA 3G9OA 1R0NB 2VUTI 5E6BA 4TNTA 2NLLB 2GDAA 1GATA 4GATA 5CC0A 5L0MA 3G6QA 2EBLA 2A66A 4NQAB 1DSZB 4HN5A 3G8XA 4OV7A 4TMAI 1LATA 3M9EA 1R4RA 1R4IA 1LO1A 3G9JA 2VUUI 1YNWB 1HLZA 4CN7A 6GATA 3G6RA 5EMCA 2HANB 1GLUA 1R0NA 5E6CA 4CN3D 3DZYD 2NLLA 4AA6A 1HRAA 4OORA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HC9 A;  3G8U A;  5GAT A;  1DSZ A;  3DFX A;  4OLN A;  3G97 A;  1R4O A;  4HCA A;  3E00 A;  1KB6 A;  3VEK C;  2VUS I;  3DZU D;  3G6U A;  1YNW A;  1KB2 A;  1LV3 A;  5KRB B;  3G6P A;  3GAT A;  1R0O B;  2HAN A;  5E6A A;  2M9W A;  5CBX A;  3FYL A;  3DFV C;  2ENV A;  5EMP A;  4HN6 A;  3VD6 C;  1RGD A;  3G99 A;  4HC7 A;  5CBZ A;  7GAT A;  1CIT A;  3G9M A;  2KAE A;  4CN3 A;  3CBB A;  2GAT A;  2FF0 A;  1BY4 A;  4IQR A;  1HCP A;  3E00 D;  1RXR A;  5E69 A;  1R0O A;  5EMQ A;  1GAU A;  4CN5 A;  3G6T A;  3G9P A;  5CC1 A;  3G9I A;  3DZU A;  1HCQ A;  5CBY A;  1GNF A;  1GA5 A;  4CN2 C;  1KB4 A;  2C7A A;  5E6D A;  4OND A;  1A6Y A;  3DZY A;  1GDC A;  3G9O A;  1R0N B;  2VUT I;  5E6B A;  4TNT A;  2NLL B;  2GDA A;  1GAT A;  4GAT A;  5CC0 A;  5L0M A;  3G6Q A;  2EBL A;  2A66 A;  4NQA B;  1DSZ B;  4HN5 A;  3G8X A;  4OV7 A;  4TMA I;  1LAT A;  3M9E A;  1R4R A;  1R4I A;  1LO1 A;  3G9J A;  2VUU I;  1YNW B;  1HLZ A;  4CN7 A;  6GAT A;  3G6R A;  5EMC A;  2HAN B;  1GLU A;  1R0N A;  5E6C A;  4CN3 D;  3DZY D;  2NLL A;  4AA6 A;  1HRA A;  4OOR A; 
#chains in the Genus database with same CATH topology
 4HC9 A;  3G8U A;  2DS6 A;  5GAT A;  1DSZ A;  3DFX A;  2DS8 A;  4OLN A;  3G97 A;  1R4O A;  4HCA A;  3E00 A;  1KB6 A;  3VEK C;  2VUS I;  3DZU D;  3G6U A;  1YNW A;  2DS5 A;  1KB2 A;  1LV3 A;  5KRB B;  3G6P A;  3GAT A;  1R0O B;  2HAN A;  5E6A A;  2M9W A;  5CBX A;  3FYL A;  3DFV C;  2ENV A;  5EMP A;  4HN6 A;  3VD6 C;  1RGD A;  3G99 A;  4HC7 A;  5CBZ A;  7GAT A;  1CIT A;  3G9M A;  2KAE A;  4CN3 A;  3CBB A;  2GAT A;  2FF0 A;  1BY4 A;  3G27 A;  4IQR A;  1HCP A;  3E00 D;  1RXR A;  5E69 A;  1R0O A;  5EMQ A;  1GAU A;  4CN5 A;  3G6T A;  3G9P A;  5CC1 A;  3G9I A;  3DZU A;  1HCQ A;  5CBY A;  1GNF A;  1GA5 A;  4CN2 C;  1KB4 A;  2C7A A;  5E6D A;  4OND A;  1A6Y A;  3DZY A;  1GDC A;  3G9O A;  1R0N B;  2VUT I;  5E6B A;  4TNT A;  2NLL B;  2GDA A;  1GAT A;  4GAT A;  5CC0 A;  5L0M A;  3G6Q A;  2EBL A;  2A66 A;  4NQA B;  1DSZ B;  4HN5 A;  3G8X A;  4OV7 A;  4TMA I;  1LAT A;  3M9E A;  1R4R A;  1R4I A;  1LO1 A;  3G9J A;  2VUU I;  1YNW B;  1HLZ A;  4CN7 A;  6GAT A;  3G6R A;  5EMC A;  2HAN B;  1GLU A;  1R0N A;  5E6C A;  4CN3 D;  3DZY D;  2NLL A;  4AA6 A;  1HRA A;  4OOR A; 
#chains in the Genus database with same CATH homology
 4HC9 A;  3G8U A;  5GAT A;  1DSZ A;  3DFX A;  4OLN A;  3G97 A;  1R4O A;  4HCA A;  3E00 A;  1KB6 A;  3VEK C;  2VUS I;  3DZU D;  3G6U A;  1YNW A;  1KB2 A;  1LV3 A;  5KRB B;  3G6P A;  3GAT A;  1R0O B;  2HAN A;  5E6A A;  2M9W A;  5CBX A;  3FYL A;  3DFV C;  2ENV A;  5EMP A;  4HN6 A;  3VD6 C;  1RGD A;  3G99 A;  4HC7 A;  5CBZ A;  7GAT A;  1CIT A;  3G9M A;  2KAE A;  4CN3 A;  3CBB A;  2GAT A;  2FF0 A;  1BY4 A;  4IQR A;  1HCP A;  3E00 D;  1RXR A;  5E69 A;  1R0O A;  5EMQ A;  1GAU A;  4CN5 A;  3G6T A;  3G9P A;  5CC1 A;  3G9I A;  3DZU A;  1HCQ A;  5CBY A;  1GNF A;  1GA5 A;  4CN2 C;  1KB4 A;  2C7A A;  5E6D A;  4OND A;  1A6Y A;  3DZY A;  1GDC A;  3G9O A;  1R0N B;  2VUT I;  5E6B A;  4TNT A;  2NLL B;  2GDA A;  1GAT A;  4GAT A;  5CC0 A;  5L0M A;  3G6Q A;  2EBL A;  2A66 A;  4NQA B;  1DSZ B;  4HN5 A;  3G8X A;  4OV7 A;  4TMA I;  1LAT A;  3M9E A;  1R4R A;  1R4I A;  1LO1 A;  3G9J A;  2VUU I;  1YNW B;  1HLZ A;  4CN7 A;  6GAT A;  3G6R A;  5EMC A;  2HAN B;  1GLU A;  1R0N A;  5E6C A;  4CN3 D;  3DZY D;  2NLL A;  4AA6 A;  1HRA A;  4OOR A; 
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similar chains in the pdb database (?% sequence similarity)

 
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