3FYLA

Gr dna binding domain:cgt complex
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
74
structure length
74
Chain Sequence
SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/dna
source organism Rattus norvegicus
publication title DNA binding site sequence directs glucocorticoid receptor structure and activity.
pubmed doi rcsb
molecule keywords Glucocorticoid receptor
total genus 17
structure length 74
sequence length 74
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 3fylA00
2M9WA 1R4RA 1KB4A 3DZUD 1HCQA 5CC0A 5CBZA 3VD6C 5E6CA 5E6AA 1BY4A 4HN6A 5L0MA 1R0NA 1KB2A 1KB6A 4OV7A 5E69A 5E6DA 3G9OA 1R4OA 2C7AA 2NLLB 1RGDA 5EMCA 3DZYD 1HLZA 1CITA 2GATA 4ONDA 3G8UA 3E00D 3VEKC 5GATA 1DSZA 4AA6A 1YNWB 3DFXA 4CN3D 2HANB 3DZUA 3DFVC 3G6TA 1LV3A 4HCAA 3FYLA 5EMQA 2FF0A 7GATA 1LO1A 2VUTI 2KAEA 3G97A 5EMPA 3CBBA 3DZYA 5CBXA 5KRBB 3GATA 1GA5A 2GDAA 3E00A 2VUUI 5CC1A 1RXRA 4HC7A 1A6YA 1R0OB 3G99A 4HN5A 1LATA 4CN3A 3G6RA 3G8XA 1DSZB 1GAUA 1GLUA 4HC9A 3G9IA 5E6BA 3G6PA 1HCPA 1R0NB 4NQAB 2HANA 2VUSI 3G6UA 1GATA 1GNFA 4CN5A 4TMAI 4OLNA 6GATA 1GDCA 1HRAA 5CBYA 4CN7A 3M9EA 2ENVA 3G9MA 2NLLA 3G6QA 4IQRA 2EBLA 3G9JA 3G9PA 4CN2C 1R4IA 4GATA 2A66A 4TNTA 1YNWA 1R0OA 4OORA
chains in the Genus database with same CATH superfamily
2M9WA 1R4RA 1KB4A 3DZUD 1HCQA 5CC0A 5CBZA 3VD6C 5E6CA 5E6AA 1BY4A 4HN6A 5L0MA 1R0NA 1KB2A 1KB6A 4OV7A 5E69A 5E6DA 3G9OA 1R4OA 2C7AA 2NLLB 1RGDA 5EMCA 3DZYD 1HLZA 1CITA 2GATA 4ONDA 3G8UA 3E00D 3VEKC 5GATA 1DSZA 4AA6A 1YNWB 3DFXA 4CN3D 2DS8A 2HANB 3DZUA 3DFVC 3G6TA 1LV3A 4HCAA 3FYLA 5EMQA 2FF0A 7GATA 1LO1A 2VUTI 2DS6A 2KAEA 3G97A 5EMPA 3CBBA 3DZYA 5CBXA 5KRBB 3GATA 1GA5A 2GDAA 3E00A 2DS5A 2VUUI 5CC1A 1RXRA 4HC7A 1A6YA 1R0OB 3G99A 4HN5A 1LATA 4CN3A 3G6RA 3G8XA 1DSZB 1GAUA 1GLUA 4HC9A 3G9IA 5E6BA 3G6PA 1HCPA 1R0NB 4NQAB 2HANA 2VUSI 3G6UA 1GATA 1GNFA 4CN5A 4TMAI 4OLNA 6GATA 1GDCA 1HRAA 3G27A 5CBYA 4CN7A 3M9EA 2ENVA 3G9MA 2NLLA 3G6QA 4IQRA 2EBLA 3G9JA 3G9PA 4CN2C 1R4IA 4GATA 2A66A 4TNTA 1YNWA 1R0OA 4OORA
chains in the Genus database with same CATH topology
2M9WA 1R4RA 1KB4A 3DZUD 1HCQA 5CC0A 5CBZA 3VD6C 5E6CA 5E6AA 1BY4A 4HN6A 5L0MA 1R0NA 1KB2A 1KB6A 4OV7A 5E69A 5E6DA 3G9OA 1R4OA 2C7AA 2NLLB 1RGDA 5EMCA 3DZYD 1HLZA 1CITA 2GATA 4ONDA 3G8UA 3E00D 3VEKC 5GATA 1DSZA 4AA6A 1YNWB 3DFXA 4CN3D 2HANB 3DZUA 3DFVC 3G6TA 1LV3A 4HCAA 3FYLA 5EMQA 2FF0A 7GATA 1LO1A 2VUTI 2KAEA 3G97A 5EMPA 3CBBA 3DZYA 5CBXA 5KRBB 3GATA 1GA5A 2GDAA 3E00A 2VUUI 5CC1A 1RXRA 4HC7A 1A6YA 1R0OB 3G99A 4HN5A 1LATA 4CN3A 3G6RA 3G8XA 1DSZB 1GAUA 1GLUA 4HC9A 3G9IA 5E6BA 3G6PA 1HCPA 1R0NB 4NQAB 2HANA 2VUSI 3G6UA 1GATA 1GNFA 4CN5A 4TMAI 4OLNA 6GATA 1GDCA 1HRAA 5CBYA 4CN7A 3M9EA 2ENVA 3G9MA 2NLLA 3G6QA 4IQRA 2EBLA 3G9JA 3G9PA 4CN2C 1R4IA 4GATA 2A66A 4TNTA 1YNWA 1R0OA 4OORA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M9W A;  1R4R A;  1KB4 A;  3DZU D;  1HCQ A;  5CC0 A;  5CBZ A;  3VD6 C;  5E6C A;  5E6A A;  1BY4 A;  4HN6 A;  5L0M A;  1R0N A;  1KB2 A;  1KB6 A;  4OV7 A;  5E69 A;  5E6D A;  3G9O A;  1R4O A;  2C7A A;  2NLL B;  1RGD A;  5EMC A;  3DZY D;  1HLZ A;  1CIT A;  2GAT A;  4OND A;  3G8U A;  3E00 D;  3VEK C;  5GAT A;  1DSZ A;  4AA6 A;  1YNW B;  3DFX A;  4CN3 D;  2HAN B;  3DZU A;  3DFV C;  3G6T A;  1LV3 A;  4HCA A;  3FYL A;  5EMQ A;  2FF0 A;  7GAT A;  1LO1 A;  2VUT I;  2KAE A;  3G97 A;  5EMP A;  3CBB A;  3DZY A;  5CBX A;  5KRB B;  3GAT A;  1GA5 A;  2GDA A;  3E00 A;  2VUU I;  5CC1 A;  1RXR A;  4HC7 A;  1A6Y A;  1R0O B;  3G99 A;  4HN5 A;  1LAT A;  4CN3 A;  3G6R A;  3G8X A;  1DSZ B;  1GAU A;  1GLU A;  4HC9 A;  3G9I A;  5E6B A;  3G6P A;  1HCP A;  1R0N B;  4NQA B;  2HAN A;  2VUS I;  3G6U A;  1GAT A;  1GNF A;  4CN5 A;  4TMA I;  4OLN A;  6GAT A;  1GDC A;  1HRA A;  5CBY A;  4CN7 A;  3M9E A;  2ENV A;  3G9M A;  2NLL A;  3G6Q A;  4IQR A;  2EBL A;  3G9J A;  3G9P A;  4CN2 C;  1R4I A;  4GAT A;  2A66 A;  4TNT A;  1YNW A;  1R0O A;  4OOR A; 
#chains in the Genus database with same CATH topology
 2M9W A;  1R4R A;  1KB4 A;  3DZU D;  1HCQ A;  5CC0 A;  5CBZ A;  3VD6 C;  5E6C A;  5E6A A;  1BY4 A;  4HN6 A;  5L0M A;  1R0N A;  1KB2 A;  1KB6 A;  4OV7 A;  5E69 A;  5E6D A;  3G9O A;  1R4O A;  2C7A A;  2NLL B;  1RGD A;  5EMC A;  3DZY D;  1HLZ A;  1CIT A;  2GAT A;  4OND A;  3G8U A;  3E00 D;  3VEK C;  5GAT A;  1DSZ A;  4AA6 A;  1YNW B;  3DFX A;  4CN3 D;  2DS8 A;  2HAN B;  3DZU A;  3DFV C;  3G6T A;  1LV3 A;  4HCA A;  3FYL A;  5EMQ A;  2FF0 A;  7GAT A;  1LO1 A;  2VUT I;  2DS6 A;  2KAE A;  3G97 A;  5EMP A;  3CBB A;  3DZY A;  5CBX A;  5KRB B;  3GAT A;  1GA5 A;  2GDA A;  3E00 A;  2DS5 A;  2VUU I;  5CC1 A;  1RXR A;  4HC7 A;  1A6Y A;  1R0O B;  3G99 A;  4HN5 A;  1LAT A;  4CN3 A;  3G6R A;  3G8X A;  1DSZ B;  1GAU A;  1GLU A;  4HC9 A;  3G9I A;  5E6B A;  3G6P A;  1HCP A;  1R0N B;  4NQA B;  2HAN A;  2VUS I;  3G6U A;  1GAT A;  1GNF A;  4CN5 A;  4TMA I;  4OLN A;  6GAT A;  1GDC A;  1HRA A;  3G27 A;  5CBY A;  4CN7 A;  3M9E A;  2ENV A;  3G9M A;  2NLL A;  3G6Q A;  4IQR A;  2EBL A;  3G9J A;  3G9P A;  4CN2 C;  1R4I A;  4GAT A;  2A66 A;  4TNT A;  1YNW A;  1R0O A;  4OOR A; 
#chains in the Genus database with same CATH homology
 2M9W A;  1R4R A;  1KB4 A;  3DZU D;  1HCQ A;  5CC0 A;  5CBZ A;  3VD6 C;  5E6C A;  5E6A A;  1BY4 A;  4HN6 A;  5L0M A;  1R0N A;  1KB2 A;  1KB6 A;  4OV7 A;  5E69 A;  5E6D A;  3G9O A;  1R4O A;  2C7A A;  2NLL B;  1RGD A;  5EMC A;  3DZY D;  1HLZ A;  1CIT A;  2GAT A;  4OND A;  3G8U A;  3E00 D;  3VEK C;  5GAT A;  1DSZ A;  4AA6 A;  1YNW B;  3DFX A;  4CN3 D;  2HAN B;  3DZU A;  3DFV C;  3G6T A;  1LV3 A;  4HCA A;  3FYL A;  5EMQ A;  2FF0 A;  7GAT A;  1LO1 A;  2VUT I;  2KAE A;  3G97 A;  5EMP A;  3CBB A;  3DZY A;  5CBX A;  5KRB B;  3GAT A;  1GA5 A;  2GDA A;  3E00 A;  2VUU I;  5CC1 A;  1RXR A;  4HC7 A;  1A6Y A;  1R0O B;  3G99 A;  4HN5 A;  1LAT A;  4CN3 A;  3G6R A;  3G8X A;  1DSZ B;  1GAU A;  1GLU A;  4HC9 A;  3G9I A;  5E6B A;  3G6P A;  1HCP A;  1R0N B;  4NQA B;  2HAN A;  2VUS I;  3G6U A;  1GAT A;  1GNF A;  4CN5 A;  4TMA I;  4OLN A;  6GAT A;  1GDC A;  1HRA A;  5CBY A;  4CN7 A;  3M9E A;  2ENV A;  3G9M A;  2NLL A;  3G6Q A;  4IQR A;  2EBL A;  3G9J A;  3G9P A;  4CN2 C;  1R4I A;  4GAT A;  2A66 A;  4TNT A;  1YNW A;  1R0O A;  4OOR A; 
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