3G27 | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	90
structure length	81
Chain Sequence	RKAARGRECQVRIPGVCNGNPETSVLAHIRKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 81 atoms

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81 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Escherichia coli k-12
publication title	Structure of a putative bacteriophage protein from Escherichia coli str. K-12 substr. MG1655 rcsb
molecule keywords	82 prophage-derived uncharacterized protein ybcO
total genus	25
structure length	81
sequence length	90
ec nomenclature
pdb deposition date	2009-01-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07102	DUF1364	Protein of unknown function (DUF1364)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.20	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	prophage-derive protein ybcO	3g27A01

3G27A
chains in the Genus database with same CATH superfamily

3DZUA 5E69A 5CBZA 1KB6A 4CN5A 2VUUI 3G9JA 3DZUD 3DZYD 2NLLA 3DFXA 4OORA 3G8XA 1CITA 5E6CA 2NLLB 2EBLA 2VUSI 1RXRA 3G9MA 2FF0A 3G27A 4HC7A 3G6TA 5L0MA 5EMQA 1HCPA 4IQRA 1GDCA 3CBBA 4ONDA 3FYLA 2M9WA 4CN7A 3G9PA 5EMPA 3DZYA 3G8UA 2GATA 2HANA 3G6PA 2C7AA 5CBYA 5GATA 1HLZA 1GNFA 1GAUA 4TNTA 4NQAB 3M9EA 3G6QA 2A66A 3VEKC 1GATA 1YNWA 1GLUA 1DSZA 1KB2A 3G6UA 2GDAA 2DS5A 2KAEA 5E6BA 1LV3A 1RGDA 5CC1A 1DSZB 1GA5A 3G9OA 5CBXA 4CN2C 1HCQA 3E00D 3VD6C 3G97A 2ENVA 3GATA 2HANB 5EMCA 1KB4A 4AA6A 1R0OA 7GATA 3DFVC 1A6YA 2DS6A 5E6DA 4HN5A 1R0OB 5CC0A 4HN6A 1YNWB 4CN3A 1R0NA 2VUTI 4GATA 4CN3D 1LO1A 1BY4A 3E00A 3G99A 1LATA 1R4IA 5E6AA 5KRBB 1R0NB 3G9IA 4OLNA 1R4RA 4HCAA 1R4OA 1HRAA 2DS8A 4TMAI 4OV7A 6GATA 4HC9A 3G6RA
chains in the Genus database with same CATH topology

3G27A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3G27 A; 
#chains in the Genus database with same CATH topology
 3DZU A;  5E69 A;  5CBZ A;  1KB6 A;  4CN5 A;  2VUU I;  3G9J A;  3DZU D;  3DZY D;  2NLL A;  3DFX A;  4OOR A;  3G8X A;  1CIT A;  5E6C A;  2NLL B;  2EBL A;  2VUS I;  1RXR A;  3G9M A;  2FF0 A;  3G27 A;  4HC7 A;  3G6T A;  5L0M A;  5EMQ A;  1HCP A;  4IQR A;  1GDC A;  3CBB A;  4OND A;  3FYL A;  2M9W A;  4CN7 A;  3G9P A;  5EMP A;  3DZY A;  3G8U A;  2GAT A;  2HAN A;  3G6P A;  2C7A A;  5CBY A;  5GAT A;  1HLZ A;  1GNF A;  1GAU A;  4TNT A;  4NQA B;  3M9E A;  3G6Q A;  2A66 A;  3VEK C;  1GAT A;  1YNW A;  1GLU A;  1DSZ A;  1KB2 A;  3G6U A;  2GDA A;  2DS5 A;  2KAE A;  5E6B A;  1LV3 A;  1RGD A;  5CC1 A;  1DSZ B;  1GA5 A;  3G9O A;  5CBX A;  4CN2 C;  1HCQ A;  3E00 D;  3VD6 C;  3G97 A;  2ENV A;  3GAT A;  2HAN B;  5EMC A;  1KB4 A;  4AA6 A;  1R0O A;  7GAT A;  3DFV C;  1A6Y A;  2DS6 A;  5E6D A;  4HN5 A;  1R0O B;  5CC0 A;  4HN6 A;  1YNW B;  4CN3 A;  1R0N A;  2VUT I;  4GAT A;  4CN3 D;  1LO1 A;  1BY4 A;  3E00 A;  3G99 A;  1LAT A;  1R4I A;  5E6A A;  5KRB B;  1R0N B;  3G9I A;  4OLN A;  1R4R A;  4HCA A;  1R4O A;  1HRA A;  2DS8 A;  4TMA I;  4OV7 A;  6GAT A;  4HC9 A;  3G6R A; 
#chains in the Genus database with same CATH homology
 3G27 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3G27A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations