3G6UA

Gr dna-binding domain:fkbp5 16bp complex-49
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
77
structure length
77
Chain Sequence
SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/dna
source organism Rattus norvegicus
publication title DNA binding site sequence directs glucocorticoid receptor structure and activity.
pubmed doi rcsb
molecule keywords Glucocorticoid receptor
total genus 17
structure length 77
sequence length 77
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-02-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 3g6uA00
3G9OA 6GATA 1CITA 3E00D 1GATA 1YNWA 4ONDA 3G99A 4CN3D 2VUSI 3G6TA 3G6UA 1YNWB 3DFXA 5CC0A 2HANA 1LO1A 2VUTI 1GNFA 3DZUD 5EMCA 4HC9A 5EMPA 1A6YA 4IQRA 2VUUI 1R4OA 3DZYA 4CN5A 3G8UA 7GATA 3G6QA 2NLLA 1LV3A 1KB2A 2GDAA 4CN3A 2GATA 2NLLB 4HC7A 5E6BA 4AA6A 1RXRA 2ENVA 5CBXA 1GA5A 4TNTA 2HANB 1KB6A 4OV7A 3G9JA 1LATA 1R0NA 3G9PA 3G9MA 5E6AA 1HCPA 1R0NB 2C7AA 2M9WA 2KAEA 3E00A 3G9IA 5EMQA 4TMAI 1HRAA 2EBLA 3G8XA 1KB4A 3CBBA 5CBYA 4OORA 1R0OA 4NQAB 1GLUA 1BY4A 5L0MA 1DSZA 1HCQA 3FYLA 4OLNA 3DZYD 3DZUA 3VD6C 5E6DA 1DSZB 3DFVC 4CN7A 5CBZA 2A66A 3G6RA 5E69A 3VEKC 4HN5A 1R4IA 4GATA 5CC1A 1GDCA 1R4RA 5E6CA 1GAUA 1RGDA 5GATA 2FF0A 4CN2C 4HCAA 3M9EA 4HN6A 1R0OB 3G6PA 3GATA 3G97A 5KRBB 1HLZA
chains in the Genus database with same CATH superfamily
3G9OA 6GATA 1CITA 3E00D 1GATA 1YNWA 4ONDA 3G99A 4CN3D 2VUSI 3G6TA 3G6UA 1YNWB 3DFXA 5CC0A 2HANA 1LO1A 2VUTI 1GNFA 3DZUD 5EMCA 2DS6A 4HC9A 5EMPA 1A6YA 4IQRA 2VUUI 1R4OA 3DZYA 4CN5A 3G8UA 7GATA 3G6QA 2NLLA 1LV3A 1KB2A 2GDAA 4CN3A 2GATA 2NLLB 4HC7A 5E6BA 4AA6A 1RXRA 2ENVA 5CBXA 1GA5A 4TNTA 2HANB 1KB6A 4OV7A 3G9JA 1LATA 1R0NA 3G9PA 3G9MA 5E6AA 1HCPA 1R0NB 2C7AA 2M9WA 2KAEA 3E00A 3G9IA 5EMQA 4TMAI 1HRAA 2EBLA 3G8XA 1KB4A 3CBBA 5CBYA 4OORA 1R0OA 4NQAB 1GLUA 1BY4A 5L0MA 1DSZA 1HCQA 3FYLA 4OLNA 3DZYD 3DZUA 3VD6C 5E6DA 1DSZB 3DFVC 4CN7A 5CBZA 2DS5A 2A66A 3G6RA 5E69A 3VEKC 3G27A 4HN5A 1R4IA 2DS8A 5CC1A 4GATA 1GDCA 1R4RA 5E6CA 1GAUA 1RGDA 5GATA 2FF0A 4CN2C 4HCAA 3M9EA 4HN6A 1R0OB 3G6PA 3GATA 3G97A 5KRBB 1HLZA
chains in the Genus database with same CATH topology
3G9OA 6GATA 1CITA 3E00D 1GATA 1YNWA 4ONDA 3G99A 4CN3D 2VUSI 3G6TA 3G6UA 1YNWB 3DFXA 5CC0A 2HANA 1LO1A 2VUTI 1GNFA 3DZUD 5EMCA 4HC9A 5EMPA 1A6YA 4IQRA 2VUUI 1R4OA 3DZYA 4CN5A 3G8UA 7GATA 3G6QA 2NLLA 1LV3A 1KB2A 2GDAA 4CN3A 2GATA 2NLLB 4HC7A 5E6BA 4AA6A 1RXRA 2ENVA 5CBXA 1GA5A 4TNTA 2HANB 1KB6A 4OV7A 3G9JA 1LATA 1R0NA 3G9PA 3G9MA 5E6AA 1HCPA 1R0NB 2C7AA 2M9WA 2KAEA 3E00A 3G9IA 5EMQA 4TMAI 1HRAA 2EBLA 3G8XA 1KB4A 3CBBA 5CBYA 4OORA 1R0OA 4NQAB 1GLUA 1BY4A 5L0MA 1DSZA 1HCQA 3FYLA 4OLNA 3DZYD 3DZUA 3VD6C 5E6DA 1DSZB 3DFVC 4CN7A 5CBZA 2A66A 3G6RA 5E69A 3VEKC 4HN5A 1R4IA 4GATA 5CC1A 1GDCA 1R4RA 5E6CA 1GAUA 1RGDA 5GATA 2FF0A 4CN2C 4HCAA 3M9EA 4HN6A 1R0OB 3G6PA 3GATA 3G97A 5KRBB 1HLZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G9O A;  6GAT A;  1CIT A;  3E00 D;  1GAT A;  1YNW A;  4OND A;  3G99 A;  4CN3 D;  2VUS I;  3G6T A;  3G6U A;  1YNW B;  3DFX A;  5CC0 A;  2HAN A;  1LO1 A;  2VUT I;  1GNF A;  3DZU D;  5EMC A;  4HC9 A;  5EMP A;  1A6Y A;  4IQR A;  2VUU I;  1R4O A;  3DZY A;  4CN5 A;  3G8U A;  7GAT A;  3G6Q A;  2NLL A;  1LV3 A;  1KB2 A;  2GDA A;  4CN3 A;  2GAT A;  2NLL B;  4HC7 A;  5E6B A;  4AA6 A;  1RXR A;  2ENV A;  5CBX A;  1GA5 A;  4TNT A;  2HAN B;  1KB6 A;  4OV7 A;  3G9J A;  1LAT A;  1R0N A;  3G9P A;  3G9M A;  5E6A A;  1HCP A;  1R0N B;  2C7A A;  2M9W A;  2KAE A;  3E00 A;  3G9I A;  5EMQ A;  4TMA I;  1HRA A;  2EBL A;  3G8X A;  1KB4 A;  3CBB A;  5CBY A;  4OOR A;  1R0O A;  4NQA B;  1GLU A;  1BY4 A;  5L0M A;  1DSZ A;  1HCQ A;  3FYL A;  4OLN A;  3DZY D;  3DZU A;  3VD6 C;  5E6D A;  1DSZ B;  3DFV C;  4CN7 A;  5CBZ A;  2A66 A;  3G6R A;  5E69 A;  3VEK C;  4HN5 A;  1R4I A;  4GAT A;  5CC1 A;  1GDC A;  1R4R A;  5E6C A;  1GAU A;  1RGD A;  5GAT A;  2FF0 A;  4CN2 C;  4HCA A;  3M9E A;  4HN6 A;  1R0O B;  3G6P A;  3GAT A;  3G97 A;  5KRB B;  1HLZ A; 
#chains in the Genus database with same CATH topology
 3G9O A;  6GAT A;  1CIT A;  3E00 D;  1GAT A;  1YNW A;  4OND A;  3G99 A;  4CN3 D;  2VUS I;  3G6T A;  3G6U A;  1YNW B;  3DFX A;  5CC0 A;  2HAN A;  1LO1 A;  2VUT I;  1GNF A;  3DZU D;  5EMC A;  2DS6 A;  4HC9 A;  5EMP A;  1A6Y A;  4IQR A;  2VUU I;  1R4O A;  3DZY A;  4CN5 A;  3G8U A;  7GAT A;  3G6Q A;  2NLL A;  1LV3 A;  1KB2 A;  2GDA A;  4CN3 A;  2GAT A;  2NLL B;  4HC7 A;  5E6B A;  4AA6 A;  1RXR A;  2ENV A;  5CBX A;  1GA5 A;  4TNT A;  2HAN B;  1KB6 A;  4OV7 A;  3G9J A;  1LAT A;  1R0N A;  3G9P A;  3G9M A;  5E6A A;  1HCP A;  1R0N B;  2C7A A;  2M9W A;  2KAE A;  3E00 A;  3G9I A;  5EMQ A;  4TMA I;  1HRA A;  2EBL A;  3G8X A;  1KB4 A;  3CBB A;  5CBY A;  4OOR A;  1R0O A;  4NQA B;  1GLU A;  1BY4 A;  5L0M A;  1DSZ A;  1HCQ A;  3FYL A;  4OLN A;  3DZY D;  3DZU A;  3VD6 C;  5E6D A;  1DSZ B;  3DFV C;  4CN7 A;  5CBZ A;  2DS5 A;  2A66 A;  3G6R A;  5E69 A;  3VEK C;  3G27 A;  4HN5 A;  1R4I A;  2DS8 A;  5CC1 A;  4GAT A;  1GDC A;  1R4R A;  5E6C A;  1GAU A;  1RGD A;  5GAT A;  2FF0 A;  4CN2 C;  4HCA A;  3M9E A;  4HN6 A;  1R0O B;  3G6P A;  3GAT A;  3G97 A;  5KRB B;  1HLZ A; 
#chains in the Genus database with same CATH homology
 3G9O A;  6GAT A;  1CIT A;  3E00 D;  1GAT A;  1YNW A;  4OND A;  3G99 A;  4CN3 D;  2VUS I;  3G6T A;  3G6U A;  1YNW B;  3DFX A;  5CC0 A;  2HAN A;  1LO1 A;  2VUT I;  1GNF A;  3DZU D;  5EMC A;  4HC9 A;  5EMP A;  1A6Y A;  4IQR A;  2VUU I;  1R4O A;  3DZY A;  4CN5 A;  3G8U A;  7GAT A;  3G6Q A;  2NLL A;  1LV3 A;  1KB2 A;  2GDA A;  4CN3 A;  2GAT A;  2NLL B;  4HC7 A;  5E6B A;  4AA6 A;  1RXR A;  2ENV A;  5CBX A;  1GA5 A;  4TNT A;  2HAN B;  1KB6 A;  4OV7 A;  3G9J A;  1LAT A;  1R0N A;  3G9P A;  3G9M A;  5E6A A;  1HCP A;  1R0N B;  2C7A A;  2M9W A;  2KAE A;  3E00 A;  3G9I A;  5EMQ A;  4TMA I;  1HRA A;  2EBL A;  3G8X A;  1KB4 A;  3CBB A;  5CBY A;  4OOR A;  1R0O A;  4NQA B;  1GLU A;  1BY4 A;  5L0M A;  1DSZ A;  1HCQ A;  3FYL A;  4OLN A;  3DZY D;  3DZU A;  3VD6 C;  5E6D A;  1DSZ B;  3DFV C;  4CN7 A;  5CBZ A;  2A66 A;  3G6R A;  5E69 A;  3VEK C;  4HN5 A;  1R4I A;  4GAT A;  5CC1 A;  1GDC A;  1R4R A;  5E6C A;  1GAU A;  1RGD A;  5GAT A;  2FF0 A;  4CN2 C;  4HCA A;  3M9E A;  4HN6 A;  1R0O B;  3G6P A;  3GAT A;  3G97 A;  5KRB B;  1HLZ A; 
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