3G97 | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	73
structure length	73
Chain Sequence	HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transcription/dna
source organism	Rattus norvegicus
publication title	DNA binding site sequence directs glucocorticoid receptor structure and activity. pubmed doi rcsb
molecule keywords	Glucocorticoid receptor
total genus	16
structure length	73
sequence length	73
chains with identical sequence	B
ec nomenclature
pdb deposition date	2009-02-13

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	3g97A00

2HANA 1BY4A 3G99A 1HCQA 3G9MA 1GATA 6GATA 3DZYD 3VEKC 3G6QA 1GA5A 4OLNA 4HN5A 5EMQA 3DFXA 5EMCA 3DZUD 1GLUA 1LV3A 1DSZA 1YNWA 4ONDA 2GATA 2M9WA 1HRAA 5E6BA 2A66A 2NLLA 4CN3D 2ENVA 1KB4A 3E00D 5CBYA 4HC9A 2GDAA 1R4OA 4IQRA 2EBLA 5E69A 3G6RA 2VUTI 1R4RA 3G8UA 1R0OA 1CITA 2HANB 3CBBA 4HCAA 4AA6A 1KB2A 3G6PA 5KRBB 1R0NA 3DZYA 1DSZB 4CN5A 4OV7A 1YNWB 4CN7A 3DZUA 5EMPA 1GNFA 5E6DA 2NLLB 4HC7A 3G97A 5CBZA 1LATA 4GATA 3G9OA 4CN3A 4CN2C 1RGDA 3DFVC 1A6YA 4HN6A 3FYLA 3VD6C 1KB6A 3E00A 3G9IA 4OORA 3G8XA 2FF0A 1R0OB 1HCPA 5CC0A 2C7AA 5CBXA 5E6AA 1RXRA 1R4IA 1R0NB 4TMAI 1HLZA 5GATA 3M9EA 2VUSI 2VUUI 1LO1A 2KAEA 5CC1A 3GATA 3G9JA 1GDCA 4TNTA 1GAUA 7GATA 3G6UA 5L0MA 4NQAB 3G6TA 3G9PA 5E6CA
chains in the Genus database with same CATH superfamily

2HANA 1BY4A 3G99A 1HCQA 3G9MA 1GATA 6GATA 3DZYD 3VEKC 3G6QA 1GA5A 4OLNA 4HN5A 5EMQA 3DFXA 5EMCA 3DZUD 1GLUA 1LV3A 1DSZA 1YNWA 4ONDA 2GATA 2M9WA 1HRAA 5E6BA 2A66A 2NLLA 4CN3D 2ENVA 1KB4A 3E00D 5CBYA 4HC9A 2GDAA 1R4OA 4IQRA 2EBLA 5E69A 3G6RA 2VUTI 1R4RA 3G8UA 1R0OA 1CITA 2HANB 3G27A 3CBBA 4HCAA 4AA6A 1KB2A 3G6PA 5KRBB 1R0NA 3DZYA 1DSZB 4CN5A 4OV7A 1YNWB 4CN7A 3DZUA 5EMPA 2DS8A 1GNFA 5E6DA 2NLLB 4HC7A 3G97A 5CBZA 1LATA 4GATA 3G9OA 4CN3A 4CN2C 1RGDA 3DFVC 1A6YA 4HN6A 3FYLA 3VD6C 1KB6A 3E00A 3G9IA 4OORA 3G8XA 2FF0A 1R0OB 1HCPA 2DS5A 5CC0A 2C7AA 5CBXA 5E6AA 1RXRA 1R4IA 1R0NB 4TMAI 1HLZA 5GATA 3M9EA 2VUSI 2DS6A 2VUUI 1LO1A 2KAEA 5CC1A 3GATA 3G9JA 1GDCA 4TNTA 1GAUA 7GATA 3G6UA 5L0MA 4NQAB 3G6TA 3G9PA 5E6CA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2HAN A;  1BY4 A;  3G99 A;  1HCQ A;  3G9M A;  1GAT A;  6GAT A;  3DZY D;  3VEK C;  3G6Q A;  1GA5 A;  4OLN A;  4HN5 A;  5EMQ A;  3DFX A;  5EMC A;  3DZU D;  1GLU A;  1LV3 A;  1DSZ A;  1YNW A;  4OND A;  2GAT A;  2M9W A;  1HRA A;  5E6B A;  2A66 A;  2NLL A;  4CN3 D;  2ENV A;  1KB4 A;  3E00 D;  5CBY A;  4HC9 A;  2GDA A;  1R4O A;  4IQR A;  2EBL A;  5E69 A;  3G6R A;  2VUT I;  1R4R A;  3G8U A;  1R0O A;  1CIT A;  2HAN B;  3CBB A;  4HCA A;  4AA6 A;  1KB2 A;  3G6P A;  5KRB B;  1R0N A;  3DZY A;  1DSZ B;  4CN5 A;  4OV7 A;  1YNW B;  4CN7 A;  3DZU A;  5EMP A;  1GNF A;  5E6D A;  2NLL B;  4HC7 A;  3G97 A;  5CBZ A;  1LAT A;  4GAT A;  3G9O A;  4CN3 A;  4CN2 C;  1RGD A;  3DFV C;  1A6Y A;  4HN6 A;  3FYL A;  3VD6 C;  1KB6 A;  3E00 A;  3G9I A;  4OOR A;  3G8X A;  2FF0 A;  1R0O B;  1HCP A;  5CC0 A;  2C7A A;  5CBX A;  5E6A A;  1RXR A;  1R4I A;  1R0N B;  4TMA I;  1HLZ A;  5GAT A;  3M9E A;  2VUS I;  2VUU I;  1LO1 A;  2KAE A;  5CC1 A;  3GAT A;  3G9J A;  1GDC A;  4TNT A;  1GAU A;  7GAT A;  3G6U A;  5L0M A;  4NQA B;  3G6T A;  3G9P A;  5E6C A; 
#chains in the Genus database with same CATH topology
 2HAN A;  1BY4 A;  3G99 A;  1HCQ A;  3G9M A;  1GAT A;  6GAT A;  3DZY D;  3VEK C;  3G6Q A;  1GA5 A;  4OLN A;  4HN5 A;  5EMQ A;  3DFX A;  5EMC A;  3DZU D;  1GLU A;  1LV3 A;  1DSZ A;  1YNW A;  4OND A;  2GAT A;  2M9W A;  1HRA A;  5E6B A;  2A66 A;  2NLL A;  4CN3 D;  2ENV A;  1KB4 A;  3E00 D;  5CBY A;  4HC9 A;  2GDA A;  1R4O A;  4IQR A;  2EBL A;  5E69 A;  3G6R A;  2VUT I;  1R4R A;  3G8U A;  1R0O A;  1CIT A;  2HAN B;  3G27 A;  3CBB A;  4HCA A;  4AA6 A;  1KB2 A;  3G6P A;  5KRB B;  1R0N A;  3DZY A;  1DSZ B;  4CN5 A;  4OV7 A;  1YNW B;  4CN7 A;  3DZU A;  5EMP A;  2DS8 A;  1GNF A;  5E6D A;  2NLL B;  4HC7 A;  3G97 A;  5CBZ A;  1LAT A;  4GAT A;  3G9O A;  4CN3 A;  4CN2 C;  1RGD A;  3DFV C;  1A6Y A;  4HN6 A;  3FYL A;  3VD6 C;  1KB6 A;  3E00 A;  3G9I A;  4OOR A;  3G8X A;  2FF0 A;  1R0O B;  1HCP A;  2DS5 A;  5CC0 A;  2C7A A;  5CBX A;  5E6A A;  1RXR A;  1R4I A;  1R0N B;  4TMA I;  1HLZ A;  5GAT A;  3M9E A;  2VUS I;  2DS6 A;  2VUU I;  1LO1 A;  2KAE A;  5CC1 A;  3GAT A;  3G9J A;  1GDC A;  4TNT A;  1GAU A;  7GAT A;  3G6U A;  5L0M A;  4NQA B;  3G6T A;  3G9P A;  5E6C A; 
#chains in the Genus database with same CATH homology
 2HAN A;  1BY4 A;  3G99 A;  1HCQ A;  3G9M A;  1GAT A;  6GAT A;  3DZY D;  3VEK C;  3G6Q A;  1GA5 A;  4OLN A;  4HN5 A;  5EMQ A;  3DFX A;  5EMC A;  3DZU D;  1GLU A;  1LV3 A;  1DSZ A;  1YNW A;  4OND A;  2GAT A;  2M9W A;  1HRA A;  5E6B A;  2A66 A;  2NLL A;  4CN3 D;  2ENV A;  1KB4 A;  3E00 D;  5CBY A;  4HC9 A;  2GDA A;  1R4O A;  4IQR A;  2EBL A;  5E69 A;  3G6R A;  2VUT I;  1R4R A;  3G8U A;  1R0O A;  1CIT A;  2HAN B;  3CBB A;  4HCA A;  4AA6 A;  1KB2 A;  3G6P A;  5KRB B;  1R0N A;  3DZY A;  1DSZ B;  4CN5 A;  4OV7 A;  1YNW B;  4CN7 A;  3DZU A;  5EMP A;  1GNF A;  5E6D A;  2NLL B;  4HC7 A;  3G97 A;  5CBZ A;  1LAT A;  4GAT A;  3G9O A;  4CN3 A;  4CN2 C;  1RGD A;  3DFV C;  1A6Y A;  4HN6 A;  3FYL A;  3VD6 C;  1KB6 A;  3E00 A;  3G9I A;  4OOR A;  3G8X A;  2FF0 A;  1R0O B;  1HCP A;  5CC0 A;  2C7A A;  5CBX A;  5E6A A;  1RXR A;  1R4I A;  1R0N B;  4TMA I;  1HLZ A;  5GAT A;  3M9E A;  2VUS I;  2VUU I;  1LO1 A;  2KAE A;  5CC1 A;  3GAT A;  3G9J A;  1GDC A;  4TNT A;  1GAU A;  7GAT A;  3G6U A;  5L0M A;  4NQA B;  3G6T A;  3G9P A;  5E6C A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3G97A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization