3JUDA

Human gamma-glutamylamine cyclotransferase, e82q mutant
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
150
structure length
144
Chain Sequence
MALVFVYGTLKRGQPNHRVLRDGAHGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVDERMLRFLDDFQSCPALYQRTVLRVQLLEEEPPAPTAVQCFVYSRATFPPEWAQLPHHDSYDSEGPHGLRYNPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Identification and characterization of {gamma}-glutamylamine cyclotransferase: An enzyme responsible for {gamma}-glutamyl-{epsilon}-lysine catabolism
pubmed doi rcsb
molecule tags Transferase
source organism Homo sapiens
molecule keywords AIG2-like domain-containing protein 1
total genus 41
structure length 144
sequence length 150
ec nomenclature ec 4.3.2.8: Gamma-glutamylamine cyclotransferase.
pdb deposition date 2009-09-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06094 GGACT Gamma-glutamyl cyclotransferase, AIG2-like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.490.10 Alpha Beta Roll Hypothetical upf0131 protein ytfp Gamma-glutamyl cyclotransferase-like 3judA00
2PN7A 4ISSA 1V30A 2I5TA 3JUDA 3JUBA 1XHSA 2G0QA 4ISTA 2QIKA 2JQVA 3CRYA 2KL2A 2Q53A 1VKBA 3JUCA 2RBHA 5C5ZA
chains in the Genus database with same CATH superfamily
1V30A 3JUDA 2G0QA 4ISTA 1VKBA 3VKGA 2RBHA 4ISSA 2I5TA 3VKHA 2PN7A 1XHSA 2QIKA 2JQVA 2XVOA 2KL2A 3JUCA 5C5ZA 3CRYA 2Q53A 3JUBA
chains in the Genus database with same CATH topology
2PN7A 4ISSA 1V30A 2I5TA 3JUDA 3JUBA 1XHSA 2G0QA 4ISTA 2QIKA 2JQVA 3CRYA 2KL2A 2Q53A 1VKBA 3JUCA 2RBHA 5C5ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PN7 A;  4ISS A;  1V30 A;  2I5T A;  3JUD A;  3JUB A;  1XHS A;  2G0Q A;  4IST A;  2QIK A;  2JQV A;  3CRY A;  2KL2 A;  2Q53 A;  1VKB A;  3JUC A;  2RBH A;  5C5Z A; 
#chains in the Genus database with same CATH topology
 1V30 A;  3JUD A;  2G0Q A;  4IST A;  1VKB A;  3VKG A;  2RBH A;  4ISS A;  2I5T A;  3VKH A;  2PN7 A;  1XHS A;  2QIK A;  2JQV A;  2XVO A;  2KL2 A;  3JUC A;  5C5Z A;  3CRY A;  2Q53 A;  3JUB A; 
#chains in the Genus database with same CATH homology
 2PN7 A;  4ISS A;  1V30 A;  2I5T A;  3JUD A;  3JUB A;  1XHS A;  2G0Q A;  4IST A;  2QIK A;  2JQV A;  3CRY A;  2KL2 A;  2Q53 A;  1VKB A;  3JUC A;  2RBH A;  5C5Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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