The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
16
|
sequence length |
65
|
structure length |
65
|
Chain Sequence |
PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Isomerase
|
| molecule keywords |
Probable tautomerase HP_0924
|
| publication title |
Kinetic and structural characterization of DmpI from Helicobacter pylori and Archaeoglobus fulgidus, two 4-oxalocrotonate tautomerase family members.
pubmed doi rcsb |
| source organism |
Helicobacter pylori
|
| total genus |
16
|
| structure length |
65
|
| sequence length |
65
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature |
ec
5.3.2.-: |
| pdb deposition date | 2010-03-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01361 | Tautomerase | Tautomerase enzyme |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Macrophage Migration Inhibitory Factor | Macrophage Migration Inhibitory Factor |
#chains in the Genus database with same CATH superfamily 3FWU A; 3M21 A; 3N4D A; 2AAL A; 4GRN A; 1MIF A; 2OPA A; 3MB2 B; 4Z1T A; 3MJZ A; 4P7M A; 4OTB A; 1OTF A; 4LHP A; 1UIZ A; 3C6V A; 4Z1U A; 4OYQ A; 4OSF A; 1P1G A; 1LJT A; 3JSF A; 2OS5 A; 3N4G A; 5BSC A; 3EJ9 A; 5HVT A; 3RF5 A; 3GAC A; 4TRF A; 3M20 A; 3CE4 A; 3DJH A; 3GAD A; 4NWQ B; 3B64 A; 3N4H A; 3L5S A; 2XCZ A; 4U5P A; 1CA7 A; 4LHO A; 3MLC A; 4WR8 A; 5HVV A; 2WKF B; 4TRU A; 1HFO A; 3MF8 A; 4XX8 A; 4PKK A; 3MB2 A; 4FAZ A; 3MF7 A; 4NWP E; 4OTA A; 3EJ7 A; 3SMB A; 1S0Y B; 4X19 A; 3L5P A; 3B9S A; 4JCU A; 5CLN A; 2FLZ A; 4PLU A; 4GRR A; 3L5V A; 5BSI A; 3JTU A; 2OOW A; 1MWW A; 4LKB A; 3L5U A; 1GYX A; 4JJ9 A; 3L5R A; 1MFI A; 4WRB A; 4OTC A; 2AAG A; 5EIZ A; 4XX7 A; 2ORM A; 3JSG A; 2GDG A; 3RY0 A; 3L5T A; 3KER A; 1GCZ A; 1MFF A; 1U9D A; 3IJJ A; 4U5R A; 1OTG A; 4GUM A; 3SMC A; 4EVG A; 2OOH A; 3EJ3 B; 2OOZ A; 4FDX A; 3WNR A; 5HVS A; 3ABF A; 1GYJ A; 3E6Q A; 3WNS A; 1BJP A; 4P0H A; 2WKF A; 2FLT A; 4Q3F A; 2WKB A; 4X1C C; 4EUI A; 4M1A A; 2FM7 A; 4P01 A; 5BSJ A; 1CGQ A; 4ETG A; 5J7P A; 1S0Y A; 4PKZ A; 2OP8 A; 3EJ7 B; 3DJI A; 1DPT A; 4GRU A; 2X4K A; 5B4O A; 3T5S A; 1GYY A; 4GRP A; 3WNT A; 3RF4 A; 3EJ3 A; 4P7S A; 3KAN A; 4GRQ A; 4DH4 A; 4F2K A; 1GD0 A; 3HOF A; 3EJ9 B; 3IJG A; 4K9G A; 5J7Q A; 3FWT A; 1FIM A; 4GRO A; 4Z15 A; 2AAJ A; 3U18 A; 1GIF A; 5CLO A; 5BS9 A; 4X1C A; #chains in the Genus database with same CATH topology 3FWU A; 3M21 A; 3N4D A; 2AAL A; 4GRN A; 1MIF A; 2OPA A; 3MB2 B; 4Z1T A; 3MJZ A; 4P7M A; 4OTB A; 1OTF A; 4LHP A; 1UIZ A; 3C6V A; 4Z1U A; 4OYQ A; 4OSF A; 1P1G A; 1LJT A; 3JSF A; 2OS5 A; 3N4G A; 5BSC A; 3EJ9 A; 5HVT A; 3RF5 A; 3GAC A; 4TRF A; 3M20 A; 3CE4 A; 3DJH A; 3GAD A; 4NWQ B; 3B64 A; 3N4H A; 3L5S A; 2XCZ A; 4U5P A; 1CA7 A; 4LHO A; 3MLC A; 4WR8 A; 5HVV A; 2WKF B; 4TRU A; 1HFO A; 3MF8 A; 4XX8 A; 4PKK A; 3MB2 A; 4FAZ A; 3MF7 A; 4NWP E; 4OTA A; 3EJ7 A; 3SMB A; 1S0Y B; 4X19 A; 3L5P A; 3B9S A; 4JCU A; 5CLN A; 2FLZ A; 4PLU A; 4GRR A; 3L5V A; 5BSI A; 3JTU A; 2OOW A; 1MWW A; 4LKB A; 3L5U A; 1GYX A; 4JJ9 A; 3L5R A; 1MFI A; 4WRB A; 4OTC A; 2AAG A; 5EIZ A; 4XX7 A; 2ORM A; 3JSG A; 2GDG A; 3RY0 A; 3L5T A; 3KER A; 1GCZ A; 1MFF A; 1U9D A; 3IJJ A; 4U5R A; 1OTG A; 4GUM A; 3SMC A; 4EVG A; 2OOH A; 3EJ3 B; 2OOZ A; 4FDX A; 3WNR A; 5HVS A; 3ABF A; 1GYJ A; 3E6Q A; 3WNS A; 1BJP A; 4P0H A; 2WKF A; 2FLT A; 4Q3F A; 2WKB A; 4X1C C; 4EUI A; 4M1A A; 2FM7 A; 4P01 A; 5BSJ A; 1CGQ A; 4ETG A; 5J7P A; 1S0Y A; 4PKZ A; 2OP8 A; 3EJ7 B; 3DJI A; 1DPT A; 4GRU A; 2X4K A; 5B4O A; 3T5S A; 1GYY A; 4GRP A; 3WNT A; 3RF4 A; 3EJ3 A; 4P7S A; 3KAN A; 4GRQ A; 4DH4 A; 4F2K A; 1GD0 A; 3HOF A; 3EJ9 B; 3IJG A; 4K9G A; 5J7Q A; 3FWT A; 1FIM A; 4GRO A; 4Z15 A; 2AAJ A; 3U18 A; 1GIF A; 5CLO A; 5BS9 A; 4X1C A; #chains in the Genus database with same CATH homology 3FWU A; 3M21 A; 3N4D A; 2AAL A; 4GRN A; 1MIF A; 2OPA A; 3MB2 B; 4Z1T A; 3MJZ A; 4P7M A; 4OTB A; 1OTF A; 4LHP A; 1UIZ A; 3C6V A; 4Z1U A; 4OYQ A; 4OSF A; 1P1G A; 1LJT A; 3JSF A; 2OS5 A; 3N4G A; 5BSC A; 3EJ9 A; 5HVT A; 3RF5 A; 3GAC A; 4TRF A; 3M20 A; 3CE4 A; 3DJH A; 3GAD A; 4NWQ B; 3B64 A; 3N4H A; 3L5S A; 2XCZ A; 4U5P A; 1CA7 A; 4LHO A; 3MLC A; 4WR8 A; 5HVV A; 2WKF B; 4TRU A; 1HFO A; 3MF8 A; 4XX8 A; 4PKK A; 3MB2 A; 4FAZ A; 3MF7 A; 4NWP E; 4OTA A; 3EJ7 A; 3SMB A; 1S0Y B; 4X19 A; 3L5P A; 3B9S A; 4JCU A; 5CLN A; 2FLZ A; 4PLU A; 4GRR A; 3L5V A; 5BSI A; 3JTU A; 2OOW A; 1MWW A; 4LKB A; 3L5U A; 1GYX A; 4JJ9 A; 3L5R A; 1MFI A; 4WRB A; 4OTC A; 2AAG A; 5EIZ A; 4XX7 A; 2ORM A; 3JSG A; 2GDG A; 3RY0 A; 3L5T A; 3KER A; 1GCZ A; 1MFF A; 1U9D A; 3IJJ A; 4U5R A; 1OTG A; 4GUM A; 3SMC A; 4EVG A; 2OOH A; 3EJ3 B; 2OOZ A; 4FDX A; 3WNR A; 5HVS A; 3ABF A; 1GYJ A; 3E6Q A; 3WNS A; 1BJP A; 4P0H A; 2WKF A; 2FLT A; 4Q3F A; 2WKB A; 4X1C C; 4EUI A; 4M1A A; 2FM7 A; 4P01 A; 5BSJ A; 1CGQ A; 4ETG A; 5J7P A; 1S0Y A; 4PKZ A; 2OP8 A; 3EJ7 B; 3DJI A; 1DPT A; 4GRU A; 2X4K A; 5B4O A; 3T5S A; 1GYY A; 4GRP A; 3WNT A; 3RF4 A; 3EJ3 A; 4P7S A; 3KAN A; 4GRQ A; 4DH4 A; 4F2K A; 1GD0 A; 3HOF A; 3EJ9 B; 3IJG A; 4K9G A; 5J7Q A; 3FWT A; 1FIM A; 4GRO A; 4Z15 A; 2AAJ A; 3U18 A; 1GIF A; 5CLO A; 5BS9 A; 4X1C A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
