3M9EA

Thyroid hormone beta dna binding domain homodimer with inverted palindrome tre
Total Genus 30
102030405060708090100051015202530
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
101
structure length
101
Chain Sequence
ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/dna
source organism Rattus norvegicus
publication title Structure of a thyroid hormone receptor DNA-binding domain homodimer bound to an inverted palindrome DNA response element.
pubmed doi rcsb
molecule keywords Thyroid hormone receptor beta
total genus 30
structure length 101
sequence length 101
chains with identical sequence B, E, F
ec nomenclature
pdb deposition date 2010-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00105 zf-C4 Zinc finger, C4 type (two domains)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 3m9eA00
3VD6C 2VUTI 5EMPA 3CBBA 1GDCA 3G6TA 4HC9A 5KRBB 5L0MA 3G9PA 1HCPA 1GNFA 4GATA 5CC0A 1R4IA 3VEKC 1LATA 2M9WA 5E6AA 2NLLB 1GAUA 1HCQA 1KB6A 3G9IA 1GLUA 1DSZA 1R0NA 2EBLA 3DZUD 3G6RA 4IQRA 1LO1A 3G9JA 3E00D 1DSZB 4TMAI 4HCAA 3G6QA 1R0NB 3G8UA 1CITA 4ONDA 3G97A 4HN5A 5EMCA 5CBYA 5E6DA 5EMQA 2NLLA 2KAEA 1R0OA 4OV7A 4CN5A 2C7AA 6GATA 1R4RA 2A66A 1R0OB 2VUSI 5CBZA 3G6PA 3DZUA 3DZYD 3G9MA 1A6YA 1RXRA 2ENVA 1R4OA 2HANB 1LV3A 3DFXA 3M9EA 1HRAA 3G8XA 4HN6A 3GATA 4CN3D 4CN7A 4OLNA 5GATA 3G9OA 1KB2A 5E6BA 5CC1A 3FYLA 3DZYA 4AA6A 2HANA 2FF0A 1GATA 3E00A 2GATA 3DFVC 1RGDA 4CN2C 1BY4A 4NQAB 2GDAA 4OORA 5E69A 7GATA 1HLZA 4HC7A 3G99A 1KB4A 1YNWA 5CBXA 5E6CA 4CN3A 2VUUI 1GA5A 1YNWB 4TNTA 3G6UA
chains in the Genus database with same CATH superfamily
2DS6A 3VD6C 2VUTI 5EMPA 3CBBA 1GDCA 3G6TA 4HC9A 5KRBB 5L0MA 3G9PA 1HCPA 1GNFA 4GATA 5CC0A 1R4IA 3VEKC 1LATA 2M9WA 5E6AA 2NLLB 1GAUA 1HCQA 1KB6A 3G9IA 1GLUA 1DSZA 1R0NA 2EBLA 3DZUD 3G6RA 4IQRA 1LO1A 3G9JA 3E00D 1DSZB 4TMAI 4HCAA 3G6QA 1R0NB 3G8UA 1CITA 4ONDA 3G97A 4HN5A 5EMCA 5CBYA 2DS5A 5E6DA 5EMQA 2NLLA 2KAEA 1R0OA 4OV7A 4CN5A 2C7AA 6GATA 1R4RA 3G27A 2A66A 1R0OB 2VUSI 5CBZA 3G6PA 3DZUA 3DZYD 3G9MA 1A6YA 1RXRA 2ENVA 1R4OA 2HANB 1LV3A 3DFXA 3M9EA 1HRAA 3G8XA 4HN6A 3GATA 4CN3D 4CN7A 4OLNA 5GATA 3G9OA 1KB2A 5E6BA 5CC1A 3FYLA 3DZYA 4AA6A 2HANA 2FF0A 1GATA 3E00A 2GATA 3DFVC 1RGDA 4CN2C 1BY4A 4NQAB 2GDAA 4OORA 5E69A 7GATA 1HLZA 4HC7A 3G99A 1KB4A 1YNWA 5CBXA 5E6CA 4CN3A 2VUUI 1GA5A 1YNWB 4TNTA 2DS8A 3G6UA
chains in the Genus database with same CATH topology
3VD6C 2VUTI 5EMPA 3CBBA 1GDCA 3G6TA 4HC9A 5KRBB 5L0MA 3G9PA 1HCPA 1GNFA 4GATA 5CC0A 1R4IA 3VEKC 1LATA 2M9WA 5E6AA 2NLLB 1GAUA 1HCQA 1KB6A 3G9IA 1GLUA 1DSZA 1R0NA 2EBLA 3DZUD 3G6RA 4IQRA 1LO1A 3G9JA 3E00D 1DSZB 4TMAI 4HCAA 3G6QA 1R0NB 3G8UA 1CITA 4ONDA 3G97A 4HN5A 5EMCA 5CBYA 5E6DA 5EMQA 2NLLA 2KAEA 1R0OA 4OV7A 4CN5A 2C7AA 6GATA 1R4RA 2A66A 1R0OB 2VUSI 5CBZA 3G6PA 3DZUA 3DZYD 3G9MA 1A6YA 1RXRA 2ENVA 1R4OA 2HANB 1LV3A 3DFXA 3M9EA 1HRAA 3G8XA 4HN6A 3GATA 4CN3D 4CN7A 4OLNA 5GATA 3G9OA 1KB2A 5E6BA 5CC1A 3FYLA 3DZYA 4AA6A 2HANA 2FF0A 1GATA 3E00A 2GATA 3DFVC 1RGDA 4CN2C 1BY4A 4NQAB 2GDAA 4OORA 5E69A 7GATA 1HLZA 4HC7A 3G99A 1KB4A 1YNWA 5CBXA 5E6CA 4CN3A 2VUUI 1GA5A 1YNWB 4TNTA 3G6UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VD6 C;  2VUT I;  5EMP A;  3CBB A;  1GDC A;  3G6T A;  4HC9 A;  5KRB B;  5L0M A;  3G9P A;  1HCP A;  1GNF A;  4GAT A;  5CC0 A;  1R4I A;  3VEK C;  1LAT A;  2M9W A;  5E6A A;  2NLL B;  1GAU A;  1HCQ A;  1KB6 A;  3G9I A;  1GLU A;  1DSZ A;  1R0N A;  2EBL A;  3DZU D;  3G6R A;  4IQR A;  1LO1 A;  3G9J A;  3E00 D;  1DSZ B;  4TMA I;  4HCA A;  3G6Q A;  1R0N B;  3G8U A;  1CIT A;  4OND A;  3G97 A;  4HN5 A;  5EMC A;  5CBY A;  5E6D A;  5EMQ A;  2NLL A;  2KAE A;  1R0O A;  4OV7 A;  4CN5 A;  2C7A A;  6GAT A;  1R4R A;  2A66 A;  1R0O B;  2VUS I;  5CBZ A;  3G6P A;  3DZU A;  3DZY D;  3G9M A;  1A6Y A;  1RXR A;  2ENV A;  1R4O A;  2HAN B;  1LV3 A;  3DFX A;  3M9E A;  1HRA A;  3G8X A;  4HN6 A;  3GAT A;  4CN3 D;  4CN7 A;  4OLN A;  5GAT A;  3G9O A;  1KB2 A;  5E6B A;  5CC1 A;  3FYL A;  3DZY A;  4AA6 A;  2HAN A;  2FF0 A;  1GAT A;  3E00 A;  2GAT A;  3DFV C;  1RGD A;  4CN2 C;  1BY4 A;  4NQA B;  2GDA A;  4OOR A;  5E69 A;  7GAT A;  1HLZ A;  4HC7 A;  3G99 A;  1KB4 A;  1YNW A;  5CBX A;  5E6C A;  4CN3 A;  2VUU I;  1GA5 A;  1YNW B;  4TNT A;  3G6U A; 
#chains in the Genus database with same CATH topology
 2DS6 A;  3VD6 C;  2VUT I;  5EMP A;  3CBB A;  1GDC A;  3G6T A;  4HC9 A;  5KRB B;  5L0M A;  3G9P A;  1HCP A;  1GNF A;  4GAT A;  5CC0 A;  1R4I A;  3VEK C;  1LAT A;  2M9W A;  5E6A A;  2NLL B;  1GAU A;  1HCQ A;  1KB6 A;  3G9I A;  1GLU A;  1DSZ A;  1R0N A;  2EBL A;  3DZU D;  3G6R A;  4IQR A;  1LO1 A;  3G9J A;  3E00 D;  1DSZ B;  4TMA I;  4HCA A;  3G6Q A;  1R0N B;  3G8U A;  1CIT A;  4OND A;  3G97 A;  4HN5 A;  5EMC A;  5CBY A;  2DS5 A;  5E6D A;  5EMQ A;  2NLL A;  2KAE A;  1R0O A;  4OV7 A;  4CN5 A;  2C7A A;  6GAT A;  1R4R A;  3G27 A;  2A66 A;  1R0O B;  2VUS I;  5CBZ A;  3G6P A;  3DZU A;  3DZY D;  3G9M A;  1A6Y A;  1RXR A;  2ENV A;  1R4O A;  2HAN B;  1LV3 A;  3DFX A;  3M9E A;  1HRA A;  3G8X A;  4HN6 A;  3GAT A;  4CN3 D;  4CN7 A;  4OLN A;  5GAT A;  3G9O A;  1KB2 A;  5E6B A;  5CC1 A;  3FYL A;  3DZY A;  4AA6 A;  2HAN A;  2FF0 A;  1GAT A;  3E00 A;  2GAT A;  3DFV C;  1RGD A;  4CN2 C;  1BY4 A;  4NQA B;  2GDA A;  4OOR A;  5E69 A;  7GAT A;  1HLZ A;  4HC7 A;  3G99 A;  1KB4 A;  1YNW A;  5CBX A;  5E6C A;  4CN3 A;  2VUU I;  1GA5 A;  1YNW B;  4TNT A;  2DS8 A;  3G6U A; 
#chains in the Genus database with same CATH homology
 3VD6 C;  2VUT I;  5EMP A;  3CBB A;  1GDC A;  3G6T A;  4HC9 A;  5KRB B;  5L0M A;  3G9P A;  1HCP A;  1GNF A;  4GAT A;  5CC0 A;  1R4I A;  3VEK C;  1LAT A;  2M9W A;  5E6A A;  2NLL B;  1GAU A;  1HCQ A;  1KB6 A;  3G9I A;  1GLU A;  1DSZ A;  1R0N A;  2EBL A;  3DZU D;  3G6R A;  4IQR A;  1LO1 A;  3G9J A;  3E00 D;  1DSZ B;  4TMA I;  4HCA A;  3G6Q A;  1R0N B;  3G8U A;  1CIT A;  4OND A;  3G97 A;  4HN5 A;  5EMC A;  5CBY A;  5E6D A;  5EMQ A;  2NLL A;  2KAE A;  1R0O A;  4OV7 A;  4CN5 A;  2C7A A;  6GAT A;  1R4R A;  2A66 A;  1R0O B;  2VUS I;  5CBZ A;  3G6P A;  3DZU A;  3DZY D;  3G9M A;  1A6Y A;  1RXR A;  2ENV A;  1R4O A;  2HAN B;  1LV3 A;  3DFX A;  3M9E A;  1HRA A;  3G8X A;  4HN6 A;  3GAT A;  4CN3 D;  4CN7 A;  4OLN A;  5GAT A;  3G9O A;  1KB2 A;  5E6B A;  5CC1 A;  3FYL A;  3DZY A;  4AA6 A;  2HAN A;  2FF0 A;  1GAT A;  3E00 A;  2GAT A;  3DFV C;  1RGD A;  4CN2 C;  1BY4 A;  4NQA B;  2GDA A;  4OOR A;  5E69 A;  7GAT A;  1HLZ A;  4HC7 A;  3G99 A;  1KB4 A;  1YNW A;  5CBX A;  5E6C A;  4CN3 A;  2VUU I;  1GA5 A;  1YNW B;  4TNT A;  3G6U A; 
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