3PVV | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	96
structure length	96
Chain Sequence	ISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 96 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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96 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Dna binding protein/dna
source organism	Mycobacterium tuberculosis
publication title	Structural and Thermodynamic Signatures of DNA Recognition by Mycobacterium tuberculosis DnaA. pubmed doi rcsb
molecule keywords	Chromosomal replication initiator protein dnaA
total genus	39
structure length	96
sequence length	96
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-12-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08299	Bac_DnaA_C	Bacterial dnaA protein helix-turn-helix

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1750.10	Mainly Alpha	Orthogonal Bundle	Chromosomal Replication Initiator Protein Dnaa; Chain: A;	Chromosomal Replication Initiator Protein Dnaa; Chain: A;	3pvvA00

1L8QA 3PVPA 2HCBA 1J1VA 3PVVA 3R8FA
chains in the Genus database with same CATH superfamily

1L8QA 3PVPA 2HCBA 1J1VA 3PVVA 3R8FA
chains in the Genus database with same CATH topology

1L8QA 3PVPA 2HCBA 1J1VA 3PVVA 3R8FA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1L8Q A;  3PVP A;  2HCB A;  1J1V A;  3PVV A;  3R8F A; 
#chains in the Genus database with same CATH topology
 1L8Q A;  3PVP A;  2HCB A;  1J1V A;  3PVV A;  3R8F A; 
#chains in the Genus database with same CATH homology
 1L8Q A;  3PVP A;  2HCB A;  1J1V A;  3PVV A;  3R8F A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3PVVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations