The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
226
|
sequence length |
888
|
structure length |
848
|
Chain Sequence |
SNPFAYLAEPLDPAQPGKKFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDIENILNWNVTQHMNIEVPFKPARVILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPICPVDLVIDFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATATFFPVDEVSIKYLVQTGRDESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETVNASSDKLYLWNPKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQAPQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLTPRMHVQVKLDTGKTFQAVIRFDTDVELTYFHNGGILNYMIRKMAK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Accommodating variety in iron-responsive elements: Crystal structure of transferrin receptor 1 B IRE bound to iron regulatory protein 1.
pubmed doi rcsb |
| molecule tags |
Lyase/rna
|
| source organism |
Oryctolagus cuniculus
|
| molecule keywords |
Cytoplasmic aconitate hydratase
|
| total genus |
226
|
| structure length |
848
|
| sequence length |
888
|
| ec nomenclature |
ec
4.2.1.3: Aconitate hydratase. |
| pdb deposition date | 2011-06-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00330 | Aconitase | Aconitase family (aconitate hydratase) |
| A | PF00694 | Aconitase_C | Aconitase C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Barrel | Aconitase; domain 4 | Aconitase, domain 4 | ||
| Alpha Beta | 2-Layer Sandwich | Aconitase; domain 3 | Aconitase, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | Aconitase; domain 3 | Aconitase; domain 3 |
#chains in the Genus database with same CATH superfamily 1V7L A; 7ACN A; 3VBA A; 2B3Y A; 4NQY A; 1ACO A; 8ACN A; 3H5J A; 6ACN A; 3SNP A; 1C96 A; 1AMI A; 1NIS A; 3Q3W A; 4KP2 A; 1C97 A; 1AMJ A; 1B0K A; 5ACN A; 2HCU A; 4KP1 A; 1B0M A; 1B0J A; 2PKP A; 1L5J A; 3H5E A; 2B3X A; 1FGH A; 3H5H A; 3SN2 A; 1NIT A; #chains in the Genus database with same CATH topology 1V7L A; 7ACN A; 3VBA A; 2B3Y A; 4NQY A; 1ACO A; 8ACN A; 3H5J A; 6ACN A; 3SNP A; 1C96 A; 1AMI A; 1NIS A; 3Q3W A; 4KP2 A; 1C97 A; 1AMJ A; 1B0K A; 5ACN A; 2HCU A; 4KP1 A; 1B0M A; 1B0J A; 2PKP A; 1L5J A; 3H5E A; 2B3X A; 1FGH A; 3H5H A; 3SN2 A; 1NIT A; #chains in the Genus database with same CATH homology 1V7L A; 7ACN A; 3VBA A; 2B3Y A; 4NQY A; 1ACO A; 8ACN A; 3H5J A; 6ACN A; 3SNP A; 1C96 A; 1AMI A; 1NIS A; 3Q3W A; 4KP2 A; 1C97 A; 1AMJ A; 1B0K A; 5ACN A; 2HCU A; 4KP1 A; 1B0M A; 1B0J A; 2PKP A; 1L5J A; 3H5E A; 2B3X A; 1FGH A; 3H5H A; 3SN2 A; 1NIT A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
