4AA6A

The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation
Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
71
structure length
69
Chain Sequence
TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/dna
source organism Homo sapiens
publication title The Oestrogen Receptor Recognizes an Imperfectly Palindromic Response Element Through an Alternative Side-Chain Conformation.
pubmed rcsb
molecule keywords ESTROGEN RECEPTOR
total genus 13
structure length 69
sequence length 71
chains with identical sequence B, E, F
ec nomenclature
pdb deposition date 2011-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00105 zf-C4 Zinc finger, C4 type (two domains)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 4aa6A00
1R0OB 6GATA 3DZUA 3G8XA 5EMPA 1HLZA 2GDAA 2M9WA 1YNWB 1GA5A 7GATA 3G6RA 1DSZB 3DZUD 3G9PA 5CBXA 2VUUI 3E00A 1R4IA 3G6PA 2C7AA 1HRAA 3M9EA 3E00D 5EMQA 5E6BA 4HC9A 4CN5A 4HN5A 1YNWA 4ONDA 2EBLA 1DSZA 4TMAI 1R4RA 1GLUA 3VD6C 1KB6A 5L0MA 3FYLA 2NLLB 2VUSI 1R0NB 3G9MA 5CBZA 2GATA 4AA6A 3G9JA 5CC1A 4TNTA 1GAUA 1KB4A 3G8UA 3VEKC 3G9IA 4OORA 3G9OA 2NLLA 4CN7A 3DZYD 3G6TA 5GATA 4OV7A 1R0NA 2HANB 4CN2C 1LV3A 3G6UA 1CITA 1GATA 2ENVA 1RGDA 3G6QA 2A66A 3CBBA 1R4OA 3DZYA 1GNFA 2VUTI 4HN6A 2HANA 2KAEA 5CBYA 4CN3D 3DFVC 2FF0A 4IQRA 4OLNA 5E6CA 4HC7A 5KRBB 1GDCA 3G99A 1HCQA 1BY4A 3GATA 5EMCA 5E6DA 1A6YA 1RXRA 5CC0A 5E6AA 1R0OA 1LATA 3DFXA 4HCAA 4GATA 1LO1A 1KB2A 4NQAB 4CN3A 1HCPA 5E69A 3G97A
chains in the Genus database with same CATH superfamily
1R0OB 6GATA 3DZUA 3G8XA 5EMPA 1HLZA 2GDAA 2M9WA 1YNWB 1GA5A 7GATA 3G6RA 1DSZB 3DZUD 3G9PA 5CBXA 2VUUI 3E00A 1R4IA 3G6PA 2C7AA 1HRAA 3M9EA 3E00D 5EMQA 5E6BA 4HC9A 4CN5A 4HN5A 1YNWA 4ONDA 2EBLA 1DSZA 4TMAI 1R4RA 1GLUA 3G27A 3VD6C 5L0MA 1KB6A 3FYLA 2NLLB 2VUSI 1R0NB 3G9MA 5CBZA 2GATA 4AA6A 3G9JA 5CC1A 4TNTA 1GAUA 1KB4A 3G8UA 3VEKC 3G9IA 4OORA 3G9OA 2NLLA 4CN7A 3DZYD 3G6TA 5GATA 4OV7A 1R0NA 2HANB 2DS6A 4CN2C 1LV3A 3G6UA 1CITA 1GATA 2ENVA 1RGDA 3G6QA 2A66A 2DS5A 3CBBA 1R4OA 3DZYA 1GNFA 2VUTI 4HN6A 2HANA 2KAEA 5CBYA 4CN3D 3DFVC 2FF0A 2DS8A 4IQRA 4OLNA 5E6CA 4HC7A 5KRBB 1GDCA 3G99A 1HCQA 1BY4A 3GATA 5EMCA 5E6DA 1A6YA 1RXRA 5CC0A 5E6AA 1R0OA 1LATA 3DFXA 4HCAA 4GATA 1LO1A 1KB2A 4NQAB 4CN3A 1HCPA 5E69A 3G97A
chains in the Genus database with same CATH topology
1R0OB 6GATA 3DZUA 3G8XA 5EMPA 1HLZA 2GDAA 2M9WA 1YNWB 1GA5A 7GATA 3G6RA 1DSZB 3DZUD 3G9PA 5CBXA 2VUUI 3E00A 1R4IA 3G6PA 2C7AA 1HRAA 3M9EA 3E00D 5EMQA 5E6BA 4HC9A 4CN5A 4HN5A 1YNWA 4ONDA 2EBLA 1DSZA 4TMAI 1R4RA 1GLUA 3VD6C 1KB6A 5L0MA 3FYLA 2NLLB 2VUSI 1R0NB 3G9MA 5CBZA 2GATA 4AA6A 3G9JA 5CC1A 4TNTA 1GAUA 1KB4A 3G8UA 3VEKC 3G9IA 4OORA 3G9OA 2NLLA 4CN7A 3DZYD 3G6TA 5GATA 4OV7A 1R0NA 2HANB 4CN2C 1LV3A 3G6UA 1CITA 1GATA 2ENVA 1RGDA 3G6QA 2A66A 3CBBA 1R4OA 3DZYA 1GNFA 2VUTI 4HN6A 2HANA 2KAEA 5CBYA 4CN3D 3DFVC 2FF0A 4IQRA 4OLNA 5E6CA 4HC7A 5KRBB 1GDCA 3G99A 1HCQA 1BY4A 3GATA 5EMCA 5E6DA 1A6YA 1RXRA 5CC0A 5E6AA 1R0OA 1LATA 3DFXA 4HCAA 4GATA 1LO1A 1KB2A 4NQAB 4CN3A 1HCPA 5E69A 3G97A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R0O B;  6GAT A;  3DZU A;  3G8X A;  5EMP A;  1HLZ A;  2GDA A;  2M9W A;  1YNW B;  1GA5 A;  7GAT A;  3G6R A;  1DSZ B;  3DZU D;  3G9P A;  5CBX A;  2VUU I;  3E00 A;  1R4I A;  3G6P A;  2C7A A;  1HRA A;  3M9E A;  3E00 D;  5EMQ A;  5E6B A;  4HC9 A;  4CN5 A;  4HN5 A;  1YNW A;  4OND A;  2EBL A;  1DSZ A;  4TMA I;  1R4R A;  1GLU A;  3VD6 C;  1KB6 A;  5L0M A;  3FYL A;  2NLL B;  2VUS I;  1R0N B;  3G9M A;  5CBZ A;  2GAT A;  4AA6 A;  3G9J A;  5CC1 A;  4TNT A;  1GAU A;  1KB4 A;  3G8U A;  3VEK C;  3G9I A;  4OOR A;  3G9O A;  2NLL A;  4CN7 A;  3DZY D;  3G6T A;  5GAT A;  4OV7 A;  1R0N A;  2HAN B;  4CN2 C;  1LV3 A;  3G6U A;  1CIT A;  1GAT A;  2ENV A;  1RGD A;  3G6Q A;  2A66 A;  3CBB A;  1R4O A;  3DZY A;  1GNF A;  2VUT I;  4HN6 A;  2HAN A;  2KAE A;  5CBY A;  4CN3 D;  3DFV C;  2FF0 A;  4IQR A;  4OLN A;  5E6C A;  4HC7 A;  5KRB B;  1GDC A;  3G99 A;  1HCQ A;  1BY4 A;  3GAT A;  5EMC A;  5E6D A;  1A6Y A;  1RXR A;  5CC0 A;  5E6A A;  1R0O A;  1LAT A;  3DFX A;  4HCA A;  4GAT A;  1LO1 A;  1KB2 A;  4NQA B;  4CN3 A;  1HCP A;  5E69 A;  3G97 A; 
#chains in the Genus database with same CATH topology
 1R0O B;  6GAT A;  3DZU A;  3G8X A;  5EMP A;  1HLZ A;  2GDA A;  2M9W A;  1YNW B;  1GA5 A;  7GAT A;  3G6R A;  1DSZ B;  3DZU D;  3G9P A;  5CBX A;  2VUU I;  3E00 A;  1R4I A;  3G6P A;  2C7A A;  1HRA A;  3M9E A;  3E00 D;  5EMQ A;  5E6B A;  4HC9 A;  4CN5 A;  4HN5 A;  1YNW A;  4OND A;  2EBL A;  1DSZ A;  4TMA I;  1R4R A;  1GLU A;  3G27 A;  3VD6 C;  5L0M A;  1KB6 A;  3FYL A;  2NLL B;  2VUS I;  1R0N B;  3G9M A;  5CBZ A;  2GAT A;  4AA6 A;  3G9J A;  5CC1 A;  4TNT A;  1GAU A;  1KB4 A;  3G8U A;  3VEK C;  3G9I A;  4OOR A;  3G9O A;  2NLL A;  4CN7 A;  3DZY D;  3G6T A;  5GAT A;  4OV7 A;  1R0N A;  2HAN B;  2DS6 A;  4CN2 C;  1LV3 A;  3G6U A;  1CIT A;  1GAT A;  2ENV A;  1RGD A;  3G6Q A;  2A66 A;  2DS5 A;  3CBB A;  1R4O A;  3DZY A;  1GNF A;  2VUT I;  4HN6 A;  2HAN A;  2KAE A;  5CBY A;  4CN3 D;  3DFV C;  2FF0 A;  2DS8 A;  4IQR A;  4OLN A;  5E6C A;  4HC7 A;  5KRB B;  1GDC A;  3G99 A;  1HCQ A;  1BY4 A;  3GAT A;  5EMC A;  5E6D A;  1A6Y A;  1RXR A;  5CC0 A;  5E6A A;  1R0O A;  1LAT A;  3DFX A;  4HCA A;  4GAT A;  1LO1 A;  1KB2 A;  4NQA B;  4CN3 A;  1HCP A;  5E69 A;  3G97 A; 
#chains in the Genus database with same CATH homology
 1R0O B;  6GAT A;  3DZU A;  3G8X A;  5EMP A;  1HLZ A;  2GDA A;  2M9W A;  1YNW B;  1GA5 A;  7GAT A;  3G6R A;  1DSZ B;  3DZU D;  3G9P A;  5CBX A;  2VUU I;  3E00 A;  1R4I A;  3G6P A;  2C7A A;  1HRA A;  3M9E A;  3E00 D;  5EMQ A;  5E6B A;  4HC9 A;  4CN5 A;  4HN5 A;  1YNW A;  4OND A;  2EBL A;  1DSZ A;  4TMA I;  1R4R A;  1GLU A;  3VD6 C;  1KB6 A;  5L0M A;  3FYL A;  2NLL B;  2VUS I;  1R0N B;  3G9M A;  5CBZ A;  2GAT A;  4AA6 A;  3G9J A;  5CC1 A;  4TNT A;  1GAU A;  1KB4 A;  3G8U A;  3VEK C;  3G9I A;  4OOR A;  3G9O A;  2NLL A;  4CN7 A;  3DZY D;  3G6T A;  5GAT A;  4OV7 A;  1R0N A;  2HAN B;  4CN2 C;  1LV3 A;  3G6U A;  1CIT A;  1GAT A;  2ENV A;  1RGD A;  3G6Q A;  2A66 A;  3CBB A;  1R4O A;  3DZY A;  1GNF A;  2VUT I;  4HN6 A;  2HAN A;  2KAE A;  5CBY A;  4CN3 D;  3DFV C;  2FF0 A;  4IQR A;  4OLN A;  5E6C A;  4HC7 A;  5KRB B;  1GDC A;  3G99 A;  1HCQ A;  1BY4 A;  3GAT A;  5EMC A;  5E6D A;  1A6Y A;  1RXR A;  5CC0 A;  5E6A A;  1R0O A;  1LAT A;  3DFX A;  4HCA A;  4GAT A;  1LO1 A;  1KB2 A;  4NQA B;  4CN3 A;  1HCP A;  5E69 A;  3G97 A; 
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