The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
19
|
sequence length |
106
|
structure length |
97
|
Chain Sequence |
QACAKGCELCSEVNGCLKCSPKLFILLERNDIRQVGVCLPSCPPGYFDARNPDMNKCIKCKIEHCEACFSHNFCTKCKEGLYLHKGRCYPACPMECS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Signaling protein
|
| source organism |
Homo sapiens
|
| publication title |
Structure of Stem Cell Growth Factor R-Spondin 1 in Complex with the Ectodomain of its Receptor Lgr5.
pubmed doi rcsb |
| molecule keywords |
R-SPONDIN-1
|
| total genus |
19
|
| structure length |
97
|
| sequence length |
106
|
| ec nomenclature | |
| pdb deposition date | 2013-06-11 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A domain 2 | Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 4P59 A; 3I2T A; 1IVO A; 1N8Z C; 3LTF A; 4UFR B; 2AHX A; 4KT1 E; 3BE1 A; 3B2V A; 4XSS E; 4BSR C; 4C9A B; 1YY9 A; 4KRP A; 4C9E B; 3LTG A; 2HR7 A; 1N8Y C; 1IGR A; 1MOX A; 3NJP A; 4UV7 A; 4BSS C; 2A91 A; 4C99 B; 4C9V B; 4CDK E; 4LEO C; 4OGA E; 4C8V A; 4C9R B; 4C9U B; 3W11 E; 4C8W I; 4LI2 B; 4XST E; 3U2P A; 3U7U A; 3N85 A; 5J3H E; 1NQL A; 4BSU C; 4QXF C; 3U9U E; 1S78 A; 4HRN C; 4KRO A; 4BSP A; 3MZW A; 4BSO A; 3WSQ A; 3P11 A; 3QWQ A; 4KNG M; 1M6B A; 3WLW A; #chains in the Genus database with same CATH topology 4P59 A; 3I2T A; 1IVO A; 1N8Z C; 3LTF A; 4UFR B; 2AHX A; 4KT1 E; 3BE1 A; 3B2V A; 4XSS E; 4BSR C; 4C9A B; 1YY9 A; 4KRP A; 4C9E B; 3LTG A; 2HR7 A; 1N8Y C; 1IGR A; 1MOX A; 3NJP A; 4UV7 A; 4BSS C; 2A91 A; 4C99 B; 4C9V B; 4CDK E; 4LEO C; 4OGA E; 4C8V A; 4C9R B; 4C9U B; 3W11 E; 4C8W I; 4LI2 B; 4XST E; 3U2P A; 3U7U A; 3N85 A; 5J3H E; 1NQL A; 4BSU C; 4QXF C; 3U9U E; 1S78 A; 4HRN C; 4KRO A; 4BSP A; 3MZW A; 4BSO A; 3WSQ A; 3P11 A; 3QWQ A; 4KNG M; 1M6B A; 3WLW A; #chains in the Genus database with same CATH homology 4P59 A; 3I2T A; 1IVO A; 1N8Z C; 3LTF A; 4UFR B; 2AHX A; 4KT1 E; 3BE1 A; 3B2V A; 4XSS E; 4BSR C; 4C9A B; 1YY9 A; 4KRP A; 4C9E B; 3LTG A; 2HR7 A; 1N8Y C; 1IGR A; 1MOX A; 3NJP A; 4UV7 A; 4BSS C; 2A91 A; 4C99 B; 4C9V B; 4CDK E; 4LEO C; 4OGA E; 4C8V A; 4C9R B; 4C9U B; 3W11 E; 4C8W I; 4LI2 B; 4XST E; 3U2P A; 3U7U A; 3N85 A; 5J3H E; 1NQL A; 4BSU C; 4QXF C; 3U9U E; 1S78 A; 4HRN C; 4KRO A; 4BSP A; 3MZW A; 4BSO A; 3WSQ A; 3P11 A; 3QWQ A; 4KNG M; 1M6B A; 3WLW A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
