4CN2 | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	82
structure length	82
Chain Sequence	MFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 82 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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82 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transcription/dna
source organism	Homo sapiens
publication title	Structural Basis of Natural Promoter Recognition by the Retinoid X Nuclear Receptor. pubmed doi rcsb
molecule keywords	5'-D(TPGPAPGPTPTPCPAPAPGPGPGPTPDC APAP*TP)-3
total genus	16
structure length	82
sequence length	82
chains with identical sequence	D
ec nomenclature
pdb deposition date	2014-01-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF00105	zf-C4	Zinc finger, C4 type (two domains)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	4cn2C00

4HN6A 3VD6C 4CN3A 4AA6A 2ENVA 3GATA 5EMCA 3DZUA 2FF0A 1DSZA 1RXRA 6GATA 5GATA 5E6CA 1RGDA 4OLNA 4NQAB 4OORA 5CBZA 4HCAA 1R0OB 4HC7A 4CN2C 2NLLA 4CN7A 3G8XA 1LATA 2HANB 3G9OA 3M9EA 4TNTA 5EMPA 3VEKC 3DZYA 1YNWB 5E6BA 1R0NB 4TMAI 3CBBA 4HC9A 1HCQA 3E00D 1LO1A 5EMQA 3DZUD 2EBLA 1R4RA 4GATA 1HLZA 2GATA 1CITA 4IQRA 1HRAA 1KB4A 3G97A 1KB6A 4CN5A 5CBYA 3G9PA 3G9IA 3G9MA 1R0OA 4ONDA 5CC1A 1GAUA 7GATA 1LV3A 5E69A 1BY4A 3G6UA 3G6PA 4CN3D 1HCPA 1DSZB 3DZYD 4OV7A 1GNFA 3G99A 3FYLA 5CC0A 1KB2A 1R0NA 1A6YA 4HN5A 5E6AA 3G6TA 3E00A 5E6DA 2NLLB 1GLUA 1GATA 2A66A 1R4OA 1R4IA 2GDAA 2VUUI 1GDCA 3DFVC 5L0MA 2VUTI 3G6RA 2HANA 3DFXA 2M9WA 2C7AA 3G8UA 3G9JA 1GA5A 5CBXA 2KAEA 5KRBB 2VUSI 3G6QA 1YNWA
chains in the Genus database with same CATH superfamily

4HN6A 3VD6C 4CN3A 4AA6A 2ENVA 3GATA 5EMCA 3DZUA 2FF0A 1DSZA 1RXRA 6GATA 5GATA 5E6CA 1RGDA 4OLNA 4NQAB 4OORA 5CBZA 4HCAA 1R0OB 4HC7A 4CN2C 2NLLA 4CN7A 3G8XA 1LATA 2HANB 3G9OA 3M9EA 4TNTA 2DS6A 2DS8A 5EMPA 3VEKC 3DZYA 1YNWB 5E6BA 1R0NB 4TMAI 3CBBA 4HC9A 1HCQA 3E00D 3G27A 1LO1A 5EMQA 3DZUD 2EBLA 1R4RA 4GATA 1HLZA 2GATA 1CITA 4IQRA 1HRAA 1KB4A 3G97A 1KB6A 4CN5A 5CBYA 3G9PA 3G9IA 3G9MA 1R0OA 4ONDA 5CC1A 1GAUA 7GATA 1LV3A 5E69A 1BY4A 3G6UA 3G6PA 4CN3D 1HCPA 1DSZB 3DZYD 4OV7A 1GNFA 3G99A 3FYLA 5CC0A 1KB2A 1R0NA 1A6YA 4HN5A 5E6AA 3G6TA 3E00A 5E6DA 2NLLB 1GLUA 1GATA 2A66A 1R4OA 1R4IA 2GDAA 2VUUI 1GDCA 3DFVC 5L0MA 2VUTI 3G6RA 2DS5A 2HANA 3DFXA 2M9WA 2C7AA 3G8UA 3G9JA 1GA5A 5CBXA 2KAEA 5KRBB 2VUSI 3G6QA 1YNWA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4HN6 A;  3VD6 C;  4CN3 A;  4AA6 A;  2ENV A;  3GAT A;  5EMC A;  3DZU A;  2FF0 A;  1DSZ A;  1RXR A;  6GAT A;  5GAT A;  5E6C A;  1RGD A;  4OLN A;  4NQA B;  4OOR A;  5CBZ A;  4HCA A;  1R0O B;  4HC7 A;  4CN2 C;  2NLL A;  4CN7 A;  3G8X A;  1LAT A;  2HAN B;  3G9O A;  3M9E A;  4TNT A;  5EMP A;  3VEK C;  3DZY A;  1YNW B;  5E6B A;  1R0N B;  4TMA I;  3CBB A;  4HC9 A;  1HCQ A;  3E00 D;  1LO1 A;  5EMQ A;  3DZU D;  2EBL A;  1R4R A;  4GAT A;  1HLZ A;  2GAT A;  1CIT A;  4IQR A;  1HRA A;  1KB4 A;  3G97 A;  1KB6 A;  4CN5 A;  5CBY A;  3G9P A;  3G9I A;  3G9M A;  1R0O A;  4OND A;  5CC1 A;  1GAU A;  7GAT A;  1LV3 A;  5E69 A;  1BY4 A;  3G6U A;  3G6P A;  4CN3 D;  1HCP A;  1DSZ B;  3DZY D;  4OV7 A;  1GNF A;  3G99 A;  3FYL A;  5CC0 A;  1KB2 A;  1R0N A;  1A6Y A;  4HN5 A;  5E6A A;  3G6T A;  3E00 A;  5E6D A;  2NLL B;  1GLU A;  1GAT A;  2A66 A;  1R4O A;  1R4I A;  2GDA A;  2VUU I;  1GDC A;  3DFV C;  5L0M A;  2VUT I;  3G6R A;  2HAN A;  3DFX A;  2M9W A;  2C7A A;  3G8U A;  3G9J A;  1GA5 A;  5CBX A;  2KAE A;  5KRB B;  2VUS I;  3G6Q A;  1YNW A; 
#chains in the Genus database with same CATH topology
 4HN6 A;  3VD6 C;  4CN3 A;  4AA6 A;  2ENV A;  3GAT A;  5EMC A;  3DZU A;  2FF0 A;  1DSZ A;  1RXR A;  6GAT A;  5GAT A;  5E6C A;  1RGD A;  4OLN A;  4NQA B;  4OOR A;  5CBZ A;  4HCA A;  1R0O B;  4HC7 A;  4CN2 C;  2NLL A;  4CN7 A;  3G8X A;  1LAT A;  2HAN B;  3G9O A;  3M9E A;  4TNT A;  2DS6 A;  2DS8 A;  5EMP A;  3VEK C;  3DZY A;  1YNW B;  5E6B A;  1R0N B;  4TMA I;  3CBB A;  4HC9 A;  1HCQ A;  3E00 D;  3G27 A;  1LO1 A;  5EMQ A;  3DZU D;  2EBL A;  1R4R A;  4GAT A;  1HLZ A;  2GAT A;  1CIT A;  4IQR A;  1HRA A;  1KB4 A;  3G97 A;  1KB6 A;  4CN5 A;  5CBY A;  3G9P A;  3G9I A;  3G9M A;  1R0O A;  4OND A;  5CC1 A;  1GAU A;  7GAT A;  1LV3 A;  5E69 A;  1BY4 A;  3G6U A;  3G6P A;  4CN3 D;  1HCP A;  1DSZ B;  3DZY D;  4OV7 A;  1GNF A;  3G99 A;  3FYL A;  5CC0 A;  1KB2 A;  1R0N A;  1A6Y A;  4HN5 A;  5E6A A;  3G6T A;  3E00 A;  5E6D A;  2NLL B;  1GLU A;  1GAT A;  2A66 A;  1R4O A;  1R4I A;  2GDA A;  2VUU I;  1GDC A;  3DFV C;  5L0M A;  2VUT I;  3G6R A;  2DS5 A;  2HAN A;  3DFX A;  2M9W A;  2C7A A;  3G8U A;  3G9J A;  1GA5 A;  5CBX A;  2KAE A;  5KRB B;  2VUS I;  3G6Q A;  1YNW A; 
#chains in the Genus database with same CATH homology
 4HN6 A;  3VD6 C;  4CN3 A;  4AA6 A;  2ENV A;  3GAT A;  5EMC A;  3DZU A;  2FF0 A;  1DSZ A;  1RXR A;  6GAT A;  5GAT A;  5E6C A;  1RGD A;  4OLN A;  4NQA B;  4OOR A;  5CBZ A;  4HCA A;  1R0O B;  4HC7 A;  4CN2 C;  2NLL A;  4CN7 A;  3G8X A;  1LAT A;  2HAN B;  3G9O A;  3M9E A;  4TNT A;  5EMP A;  3VEK C;  3DZY A;  1YNW B;  5E6B A;  1R0N B;  4TMA I;  3CBB A;  4HC9 A;  1HCQ A;  3E00 D;  1LO1 A;  5EMQ A;  3DZU D;  2EBL A;  1R4R A;  4GAT A;  1HLZ A;  2GAT A;  1CIT A;  4IQR A;  1HRA A;  1KB4 A;  3G97 A;  1KB6 A;  4CN5 A;  5CBY A;  3G9P A;  3G9I A;  3G9M A;  1R0O A;  4OND A;  5CC1 A;  1GAU A;  7GAT A;  1LV3 A;  5E69 A;  1BY4 A;  3G6U A;  3G6P A;  4CN3 D;  1HCP A;  1DSZ B;  3DZY D;  4OV7 A;  1GNF A;  3G99 A;  3FYL A;  5CC0 A;  1KB2 A;  1R0N A;  1A6Y A;  4HN5 A;  5E6A A;  3G6T A;  3E00 A;  5E6D A;  2NLL B;  1GLU A;  1GAT A;  2A66 A;  1R4O A;  1R4I A;  2GDA A;  2VUU I;  1GDC A;  3DFV C;  5L0M A;  2VUT I;  3G6R A;  2HAN A;  3DFX A;  2M9W A;  2C7A A;  3G8U A;  3G9J A;  1GA5 A;  5CBX A;  2KAE A;  5KRB B;  2VUS I;  3G6Q A;  1YNW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4CN2C

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations