4CN3 | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	78
structure length	78
Chain Sequence	KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDDKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transcription/dna
source organism	Homo sapiens
publication title	Structural Basis of Natural Promoter Recognition by the Retinoid X Nuclear Receptor. pubmed doi rcsb
molecule keywords	RETINOIC ACID RECEPTOR RXR-ALPHA
total genus	22
structure length	78
sequence length	78
ec nomenclature
pdb deposition date	2014-01-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00105	zf-C4	Zinc finger, C4 type (two domains)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	4cn3D00

3DZYD 3VEKC 4IQRA 4HC7A 1HCQA 4OLNA 3G9JA 4HN6A 5KRBB 1KB4A 4CN2C 1DSZA 4CN3A 5E6AA 3G6TA 5E6CA 5EMPA 1R0OB 1HLZA 5E6BA 3G9OA 3G8XA 5CBXA 2A66A 5CC0A 1KB2A 4TNTA 4CN7A 1A6YA 2M9WA 1GAUA 2NLLA 4ONDA 3G99A 4NQAB 4OV7A 4CN3D 4TMAI 5EMQA 1GATA 1RGDA 5E6DA 4OORA 3G8UA 1YNWA 7GATA 5CBYA 3G6UA 1GDCA 1KB6A 1R4RA 5L0MA 3M9EA 2EBLA 5EMCA 2C7AA 3G9MA 1LO1A 3G6PA 1R0OA 3G97A 1R0NA 2VUSI 1BY4A 3G6QA 1HCPA 4HC9A 2GATA 5CBZA 3CBBA 4CN5A 3G9PA 2HANB 2NLLB 1GNFA 1R4IA 3FYLA 3VD6C 2VUUI 4AA6A 3G9IA 1GA5A 1DSZB 1R4OA 1LV3A 1CITA 5E69A 2ENVA 4GATA 3GATA 4HN5A 1YNWB 3DZUA 1GLUA 3DZUD 1LATA 2GDAA 4HCAA 3DFXA 2FF0A 5GATA 6GATA 1R0NB 1RXRA 5CC1A 3G6RA 2KAEA 3DFVC 2VUTI 3E00A 1HRAA 3E00D 2HANA 3DZYA
chains in the Genus database with same CATH superfamily

2DS5A 3DZYD 3VEKC 4IQRA 4HC7A 1HCQA 4OLNA 3G9JA 4HN6A 5KRBB 1KB4A 4CN2C 1DSZA 4CN3A 5E6AA 3G6TA 5E6CA 5EMPA 1R0OB 1HLZA 5E6BA 3G9OA 3G8XA 5CBXA 2A66A 5CC0A 1KB2A 4TNTA 4CN7A 1A6YA 2M9WA 1GAUA 2NLLA 3G27A 4ONDA 3G99A 4NQAB 4OV7A 4CN3D 4TMAI 5EMQA 1GATA 2DS6A 1RGDA 5E6DA 4OORA 3G8UA 1YNWA 7GATA 5CBYA 3G6UA 1GDCA 1KB6A 1R4RA 5L0MA 3M9EA 2EBLA 5EMCA 2C7AA 3G9MA 1LO1A 3G6PA 1R0OA 3G97A 1R0NA 2VUSI 1BY4A 3G6QA 1HCPA 4HC9A 2GATA 5CBZA 3CBBA 2DS8A 4CN5A 3G9PA 2HANB 2NLLB 1GNFA 1R4IA 3FYLA 3VD6C 2VUUI 4AA6A 3G9IA 1GA5A 1DSZB 1R4OA 1LV3A 1CITA 5E69A 2ENVA 4GATA 3GATA 4HN5A 1YNWB 3DZUA 1GLUA 3DZUD 1LATA 2GDAA 4HCAA 3DFXA 2FF0A 5GATA 6GATA 1R0NB 1RXRA 5CC1A 3G6RA 2KAEA 3DFVC 2VUTI 3E00A 1HRAA 3E00D 2HANA 3DZYA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3DZY D;  3VEK C;  4IQR A;  4HC7 A;  1HCQ A;  4OLN A;  3G9J A;  4HN6 A;  5KRB B;  1KB4 A;  4CN2 C;  1DSZ A;  4CN3 A;  5E6A A;  3G6T A;  5E6C A;  5EMP A;  1R0O B;  1HLZ A;  5E6B A;  3G9O A;  3G8X A;  5CBX A;  2A66 A;  5CC0 A;  1KB2 A;  4TNT A;  4CN7 A;  1A6Y A;  2M9W A;  1GAU A;  2NLL A;  4OND A;  3G99 A;  4NQA B;  4OV7 A;  4CN3 D;  4TMA I;  5EMQ A;  1GAT A;  1RGD A;  5E6D A;  4OOR A;  3G8U A;  1YNW A;  7GAT A;  5CBY A;  3G6U A;  1GDC A;  1KB6 A;  1R4R A;  5L0M A;  3M9E A;  2EBL A;  5EMC A;  2C7A A;  3G9M A;  1LO1 A;  3G6P A;  1R0O A;  3G97 A;  1R0N A;  2VUS I;  1BY4 A;  3G6Q A;  1HCP A;  4HC9 A;  2GAT A;  5CBZ A;  3CBB A;  4CN5 A;  3G9P A;  2HAN B;  2NLL B;  1GNF A;  1R4I A;  3FYL A;  3VD6 C;  2VUU I;  4AA6 A;  3G9I A;  1GA5 A;  1DSZ B;  1R4O A;  1LV3 A;  1CIT A;  5E69 A;  2ENV A;  4GAT A;  3GAT A;  4HN5 A;  1YNW B;  3DZU A;  1GLU A;  3DZU D;  1LAT A;  2GDA A;  4HCA A;  3DFX A;  2FF0 A;  5GAT A;  6GAT A;  1R0N B;  1RXR A;  5CC1 A;  3G6R A;  2KAE A;  3DFV C;  2VUT I;  3E00 A;  1HRA A;  3E00 D;  2HAN A;  3DZY A; 
#chains in the Genus database with same CATH topology
 2DS5 A;  3DZY D;  3VEK C;  4IQR A;  4HC7 A;  1HCQ A;  4OLN A;  3G9J A;  4HN6 A;  5KRB B;  1KB4 A;  4CN2 C;  1DSZ A;  4CN3 A;  5E6A A;  3G6T A;  5E6C A;  5EMP A;  1R0O B;  1HLZ A;  5E6B A;  3G9O A;  3G8X A;  5CBX A;  2A66 A;  5CC0 A;  1KB2 A;  4TNT A;  4CN7 A;  1A6Y A;  2M9W A;  1GAU A;  2NLL A;  3G27 A;  4OND A;  3G99 A;  4NQA B;  4OV7 A;  4CN3 D;  4TMA I;  5EMQ A;  1GAT A;  2DS6 A;  1RGD A;  5E6D A;  4OOR A;  3G8U A;  1YNW A;  7GAT A;  5CBY A;  3G6U A;  1GDC A;  1KB6 A;  1R4R A;  5L0M A;  3M9E A;  2EBL A;  5EMC A;  2C7A A;  3G9M A;  1LO1 A;  3G6P A;  1R0O A;  3G97 A;  1R0N A;  2VUS I;  1BY4 A;  3G6Q A;  1HCP A;  4HC9 A;  2GAT A;  5CBZ A;  3CBB A;  2DS8 A;  4CN5 A;  3G9P A;  2HAN B;  2NLL B;  1GNF A;  1R4I A;  3FYL A;  3VD6 C;  2VUU I;  4AA6 A;  3G9I A;  1GA5 A;  1DSZ B;  1R4O A;  1LV3 A;  1CIT A;  5E69 A;  2ENV A;  4GAT A;  3GAT A;  4HN5 A;  1YNW B;  3DZU A;  1GLU A;  3DZU D;  1LAT A;  2GDA A;  4HCA A;  3DFX A;  2FF0 A;  5GAT A;  6GAT A;  1R0N B;  1RXR A;  5CC1 A;  3G6R A;  2KAE A;  3DFV C;  2VUT I;  3E00 A;  1HRA A;  3E00 D;  2HAN A;  3DZY A; 
#chains in the Genus database with same CATH homology
 3DZY D;  3VEK C;  4IQR A;  4HC7 A;  1HCQ A;  4OLN A;  3G9J A;  4HN6 A;  5KRB B;  1KB4 A;  4CN2 C;  1DSZ A;  4CN3 A;  5E6A A;  3G6T A;  5E6C A;  5EMP A;  1R0O B;  1HLZ A;  5E6B A;  3G9O A;  3G8X A;  5CBX A;  2A66 A;  5CC0 A;  1KB2 A;  4TNT A;  4CN7 A;  1A6Y A;  2M9W A;  1GAU A;  2NLL A;  4OND A;  3G99 A;  4NQA B;  4OV7 A;  4CN3 D;  4TMA I;  5EMQ A;  1GAT A;  1RGD A;  5E6D A;  4OOR A;  3G8U A;  1YNW A;  7GAT A;  5CBY A;  3G6U A;  1GDC A;  1KB6 A;  1R4R A;  5L0M A;  3M9E A;  2EBL A;  5EMC A;  2C7A A;  3G9M A;  1LO1 A;  3G6P A;  1R0O A;  3G97 A;  1R0N A;  2VUS I;  1BY4 A;  3G6Q A;  1HCP A;  4HC9 A;  2GAT A;  5CBZ A;  3CBB A;  4CN5 A;  3G9P A;  2HAN B;  2NLL B;  1GNF A;  1R4I A;  3FYL A;  3VD6 C;  2VUU I;  4AA6 A;  3G9I A;  1GA5 A;  1DSZ B;  1R4O A;  1LV3 A;  1CIT A;  5E69 A;  2ENV A;  4GAT A;  3GAT A;  4HN5 A;  1YNW B;  3DZU A;  1GLU A;  3DZU D;  1LAT A;  2GDA A;  4HCA A;  3DFX A;  2FF0 A;  5GAT A;  6GAT A;  1R0N B;  1RXR A;  5CC1 A;  3G6R A;  2KAE A;  3DFV C;  2VUT I;  3E00 A;  1HRA A;  3E00 D;  2HAN A;  3DZY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4CN3D

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations