The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
24
|
sequence length |
177
|
structure length |
139
|
Chain Sequence |
GTDMKLRLPSPETHLDMLRHLYQGCQVGNLELTYLPASLSFQDIQEVQGYVLIAHNQVRQVPLQRLRIVRGTQLFEDNALAVLDNGGLRELQLRSLTEIKGGVLIQRNPQLCYQDTILWKDIFNQLALTLIDRSCHPRC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transferase/de novo protein
|
| source organism |
Homo sapiens
|
| publication title |
Structural Basis for Eliciting a Cytotoxic Effect in HER2-Overexpressing Cancer Cells via Binding to the Extracellular Domain of HER2.
pubmed doi rcsb |
| molecule keywords |
Domain I of receptor tyrosine-protein kinase erbB-2
|
| total genus |
24
|
| structure length |
139
|
| sequence length |
177
|
| chains with identical sequence |
C
|
| ec nomenclature |
ec
2.7.10.1: Receptor protein-tyrosine kinase. |
| pdb deposition date | 2012-10-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01030 | Recep_L_domain | Receptor L domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Horseshoe | 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A | Receptor L-domain |
#chains in the Genus database with same CATH superfamily 4LEO C; 3U9U E; 3LTG A; 3NJP A; 5SX4 M; 1NQL A; 3I2T A; 4KRL A; 3H3B A; 1YY9 A; 4KRP A; 4OGA E; 4KRM A; 2HR7 A; 4P59 A; 3P0Y A; 3WLW A; 4XSS E; 1M6B A; 3W11 E; 2AHX A; 4XST E; 1IGR A; 3MZW A; 4HRM A; 1N8Z C; 1S78 A; 3LTF A; 3N85 A; 3U7U A; 3B2V A; 3P11 A; 4HRL C; 3C09 A; 3U2P A; 3WSQ A; 4UV7 A; 1MOX A; 1N8Y C; 3QWQ A; 4KRO A; 5J3H E; 2A91 A; 3B2U A; 5SX5 M; 1IVO A; 3BE1 A; #chains in the Genus database with same CATH topology 4LEO C; 3U9U E; 3LTG A; 3NJP A; 5SX4 M; 1NQL A; 3I2T A; 4KRL A; 3H3B A; 1YY9 A; 4KRP A; 4OGA E; 4KRM A; 2HR7 A; 4P59 A; 3P0Y A; 3WLW A; 4XSS E; 1M6B A; 3W11 E; 2AHX A; 4XST E; 1IGR A; 3MZW A; 4HRM A; 1N8Z C; 1S78 A; 3LTF A; 3N85 A; 3U7U A; 3B2V A; 3P11 A; 4HRL C; 3C09 A; 3U2P A; 3WSQ A; 4UV7 A; 1MOX A; 1N8Y C; 3QWQ A; 4KRO A; 5J3H E; 2A91 A; 3B2U A; 5SX5 M; 1IVO A; 3BE1 A; #chains in the Genus database with same CATH homology 4LEO C; 3U9U E; 3LTG A; 3NJP A; 5SX4 M; 1NQL A; 3I2T A; 4KRL A; 3H3B A; 1YY9 A; 4KRP A; 4OGA E; 4KRM A; 2HR7 A; 4P59 A; 3P0Y A; 3WLW A; 4XSS E; 1M6B A; 3W11 E; 2AHX A; 4XST E; 1IGR A; 3MZW A; 4HRM A; 1N8Z C; 1S78 A; 3LTF A; 3N85 A; 3U7U A; 3B2V A; 3P11 A; 4HRL C; 3C09 A; 3U2P A; 3WSQ A; 4UV7 A; 1MOX A; 1N8Y C; 3QWQ A; 4KRO A; 5J3H E; 2A91 A; 3B2U A; 5SX5 M; 1IVO A; 3BE1 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
