4JI7N

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 11
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 11
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2013-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4ji7N00
1HNWN 2ZM6N 4DR6N 5FLXd 4GKJN 4LF8N 2F4VN 2UXBN 4B3TN 3J81d 1XMQN 4LF4N 4GKKN 5BR8N 4LF6N 2UUAN 4JI7N 4DR7N 2UUBN 2VQEN 1N32N 4X62N 1HNZN 4DV2N 1N36N 4JI0N 5IWAN 4NXNN 1IBKN 2HHHN 2UXCN 4JI1N 4YHHN 4JI5N 4DR4N 1HNXN 1IBMN 1N33N 4OX9N 2UUCN 4DUYN 4DV1N 4JI3N 3OTON 4DV4N 2UXDN 4JI4N 4LFBN 1J5EN 4DV5N 4DUZN 4LFCN 4B3MN 4DV7N 5IT9d 3JAMd 1HR0N 3J80d 4JI2N 1FJGN 1I94N 4DV6N 1N34N 4DR2N 4X64N 3T1HN 4YY3N 4LF9N 1IBLN 5LMNN 4DR1N 4K0KN 2VQFN 4NXMN 1XNQN 5A2Qd 5LMUN 2UU9N 4B3SN 4JV5N 1XNRN 4DR3N 3J7AT 4JI6N 3T1YN 4LF5N 4AQYN 4X65N 4KHPN 4DR5N 2E5LN 4JI8N 4X66N 4JYAN 1XMON 4LF7N 4LFAN 4B3RN 4DV3N 4DV0N
chains in the Genus database with same CATH superfamily
1HNWN 2ZM6N 4DR6N 5FLXd 4GKJN 4LF8N 2F4VN 2UXBN 4B3TN 3J81d 1XMQN 4LF4N 4GKKN 5BR8N 4LF6N 2UUAN 4JI7N 4DR7N 2UUBN 2VQEN 1N32N 4X62N 1HNZN 4DV2N 1N36N 4JI0N 5IWAN 4NXNN 1IBKN 2HHHN 2UXCN 4JI1N 4YHHN 4JI5N 4DR4N 1HNXN 1IBMN 1N33N 4OX9N 2UUCN 4DUYN 4DV1N 4JI3N 3OTON 4DV4N 2UXDN 4JI4N 4LFBN 1J5EN 4DV5N 4DUZN 4LFCN 4B3MN 4DV7N 5IT9d 3JAMd 1HR0N 3J80d 4JI2N 1FJGN 1I94N 4DV6N 1N34N 4DR2N 4X64N 3T1HN 4YY3N 4LF9N 1IBLN 5LMNN 4DR1N 4K0KN 2VQFN 4NXMN 1XNQN 5A2Qd 5LMUN 2UU9N 4B3SN 4JV5N 1XNRN 4DR3N 3J7AT 4JI6N 3T1YN 4LF5N 4AQYN 4X65N 4KHPN 4DR5N 2E5LN 4JI8N 4X66N 4JYAN 1XMON 4LF7N 4LFAN 4B3RN 4DV3N 4DV0N
chains in the Genus database with same CATH topology
1HNWN 2ZM6N 4DR6N 5FLXd 4GKJN 4LF8N 2F4VN 2UXBN 4B3TN 3J81d 1XMQN 4LF4N 4GKKN 5BR8N 4LF6N 2UUAN 4JI7N 4DR7N 2UUBN 2VQEN 1N32N 4X62N 1HNZN 4DV2N 1N36N 4JI0N 5IWAN 4NXNN 1IBKN 2HHHN 2UXCN 4JI1N 4YHHN 4JI5N 4DR4N 1HNXN 1IBMN 1N33N 4OX9N 2UUCN 4DUYN 4DV1N 4JI3N 3OTON 4DV4N 2UXDN 4JI4N 4LFBN 1J5EN 4DV5N 4DUZN 4LFCN 4B3MN 4DV7N 5IT9d 3JAMd 1HR0N 3J80d 4JI2N 1FJGN 1I94N 4DV6N 1N34N 4DR2N 4X64N 3T1HN 4YY3N 4LF9N 1IBLN 5LMNN 4DR1N 4K0KN 2VQFN 4NXMN 1XNQN 5A2Qd 5LMUN 2UU9N 4B3SN 4JV5N 1XNRN 4DR3N 3J7AT 4JI6N 3T1YN 4LF5N 4AQYN 4X65N 4KHPN 4DR5N 2E5LN 4JI8N 4X66N 4JYAN 1XMON 4LF7N 4LFAN 4B3RN 4DV3N 4DV0N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HNW N;  2ZM6 N;  4DR6 N;  5FLX d;  4GKJ N;  4LF8 N;  2F4V N;  2UXB N;  4B3T N;  3J81 d;  1XMQ N;  4LF4 N;  4GKK N;  5BR8 N;  4LF6 N;  2UUA N;  4JI7 N;  4DR7 N;  2UUB N;  2VQE N;  1N32 N;  4X62 N;  1HNZ N;  4DV2 N;  1N36 N;  4JI0 N;  5IWA N;  4NXN N;  1IBK N;  2HHH N;  2UXC N;  4JI1 N;  4YHH N;  4JI5 N;  4DR4 N;  1HNX N;  1IBM N;  1N33 N;  4OX9 N;  2UUC N;  4DUY N;  4DV1 N;  4JI3 N;  3OTO N;  4DV4 N;  2UXD N;  4JI4 N;  4LFB N;  1J5E N;  4DV5 N;  4DUZ N;  4LFC N;  4B3M N;  4DV7 N;  5IT9 d;  3JAM d;  1HR0 N;  3J80 d;  4JI2 N;  1FJG N;  1I94 N;  4DV6 N;  1N34 N;  4DR2 N;  4X64 N;  3T1H N;  4YY3 N;  4LF9 N;  1IBL N;  5LMN N;  4DR1 N;  4K0K N;  2VQF N;  4NXM N;  1XNQ N;  5A2Q d;  5LMU N;  2UU9 N;  4B3S N;  4JV5 N;  1XNR N;  4DR3 N;  3J7A T;  4JI6 N;  3T1Y N;  4LF5 N;  4AQY N;  4X65 N;  4KHP N;  4DR5 N;  2E5L N;  4JI8 N;  4X66 N;  4JYA N;  1XMO N;  4LF7 N;  4LFA N;  4B3R N;  4DV3 N;  4DV0 N; 
#chains in the Genus database with same CATH topology
 1HNW N;  2ZM6 N;  4DR6 N;  5FLX d;  4GKJ N;  4LF8 N;  2F4V N;  2UXB N;  4B3T N;  3J81 d;  1XMQ N;  4LF4 N;  4GKK N;  5BR8 N;  4LF6 N;  2UUA N;  4JI7 N;  4DR7 N;  2UUB N;  2VQE N;  1N32 N;  4X62 N;  1HNZ N;  4DV2 N;  1N36 N;  4JI0 N;  5IWA N;  4NXN N;  1IBK N;  2HHH N;  2UXC N;  4JI1 N;  4YHH N;  4JI5 N;  4DR4 N;  1HNX N;  1IBM N;  1N33 N;  4OX9 N;  2UUC N;  4DUY N;  4DV1 N;  4JI3 N;  3OTO N;  4DV4 N;  2UXD N;  4JI4 N;  4LFB N;  1J5E N;  4DV5 N;  4DUZ N;  4LFC N;  4B3M N;  4DV7 N;  5IT9 d;  3JAM d;  1HR0 N;  3J80 d;  4JI2 N;  1FJG N;  1I94 N;  4DV6 N;  1N34 N;  4DR2 N;  4X64 N;  3T1H N;  4YY3 N;  4LF9 N;  1IBL N;  5LMN N;  4DR1 N;  4K0K N;  2VQF N;  4NXM N;  1XNQ N;  5A2Q d;  5LMU N;  2UU9 N;  4B3S N;  4JV5 N;  1XNR N;  4DR3 N;  3J7A T;  4JI6 N;  3T1Y N;  4LF5 N;  4AQY N;  4X65 N;  4KHP N;  4DR5 N;  2E5L N;  4JI8 N;  4X66 N;  4JYA N;  1XMO N;  4LF7 N;  4LFA N;  4B3R N;  4DV3 N;  4DV0 N; 
#chains in the Genus database with same CATH homology
 1HNW N;  2ZM6 N;  4DR6 N;  5FLX d;  4GKJ N;  4LF8 N;  2F4V N;  2UXB N;  4B3T N;  3J81 d;  1XMQ N;  4LF4 N;  4GKK N;  5BR8 N;  4LF6 N;  2UUA N;  4JI7 N;  4DR7 N;  2UUB N;  2VQE N;  1N32 N;  4X62 N;  1HNZ N;  4DV2 N;  1N36 N;  4JI0 N;  5IWA N;  4NXN N;  1IBK N;  2HHH N;  2UXC N;  4JI1 N;  4YHH N;  4JI5 N;  4DR4 N;  1HNX N;  1IBM N;  1N33 N;  4OX9 N;  2UUC N;  4DUY N;  4DV1 N;  4JI3 N;  3OTO N;  4DV4 N;  2UXD N;  4JI4 N;  4LFB N;  1J5E N;  4DV5 N;  4DUZ N;  4LFC N;  4B3M N;  4DV7 N;  5IT9 d;  3JAM d;  1HR0 N;  3J80 d;  4JI2 N;  1FJG N;  1I94 N;  4DV6 N;  1N34 N;  4DR2 N;  4X64 N;  3T1H N;  4YY3 N;  4LF9 N;  1IBL N;  5LMN N;  4DR1 N;  4K0K N;  2VQF N;  4NXM N;  1XNQ N;  5A2Q d;  5LMU N;  2UU9 N;  4B3S N;  4JV5 N;  1XNR N;  4DR3 N;  3J7A T;  4JI6 N;  3T1Y N;  4LF5 N;  4AQY N;  4X65 N;  4KHP N;  4DR5 N;  2E5L N;  4JI8 N;  4X66 N;  4JYA N;  1XMO N;  4LF7 N;  4LFA N;  4B3R N;  4DV3 N;  4DV0 N; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...