4JV5R

Crystal structures of pseudouridinilated stop codons with asls
Total Genus 15
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
70
structure length
70
Chain Sequence
KAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Unusual base pairing during the decoding of a stop codon by the ribosome.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S ribosomal RNA
total genus 15
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2013-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4jv5R00
4DV1R 4K0KR 2HHHR 5LMNR 4JI3R 4B3TR 4LFBR 2UXCR 4LFCR 2UXBR 4LF4R 4DUZR 2VQER 4X64R 4GKJR 4LF9R 2E5LR 2VQFR 4YHHR 1XMQR 1FJGR 4AQYR 1N34R 1XNRR 4DR6R 3OTOR 4JI0R 4JYAR 4DV4R 4X66R 2UUBR 4LF7R 4DV2R 1XMOR 3T1HR 2UU9R 1N33R 4DUYR 1IBMR 4JI7R 4JV5R 4NXNR 4DR3R 5LMUR 4DR1R 4B3SR 4LFAR 4X62R 4DV5R 4DV7R 4GKKR 4OX9R 4JI5R 1HR0R 1HNXR 4DR4R 3T1YR 4DR2R 1FKAR 4JI6R 2UXDR 2ZM6R 4X65R 1HNWR 1G1XC 1I94R 2UUAR 1N36R 2UUCR 4DR7R 4JI2R 4B3MR 4JI8R 4DV0R 4LF5R 4B3RR 1J5ER 4YY3R 4LF6R 4JI4R 1IBKR 4NXMR 1XNQR 4DV6R 1HNZR 2F4VR 4JI1R 1N32R 5BR8R 4DR5R 4DV3R 4KHPR 1IBLR 4LF8R
chains in the Genus database with same CATH superfamily
4DV1R 4K0KR 2HHHR 5LMNR 4JI3R 4B3TR 4LFBR 2UXCR 4LFCR 2UXBR 4LF4R 4DUZR 2VQER 4X64R 4GKJR 4LF9R 2E5LR 2VQFR 4YHHR 1XMQR 1FJGR 4AQYR 1N34R 1XNRR 4DR6R 3OTOR 4JI0R 4JYAR 4DV4R 4X66R 2UUBR 4LF7R 4DV2R 1XMOR 3T1HR 2UU9R 1N33R 4DUYR 1IBMR 4JI7R 4JV5R 4NXNR 4DR3R 5LMUR 4DR1R 4B3SR 4LFAR 4X62R 4DV5R 4DV7R 4GKKR 4OX9R 4JI5R 1HR0R 1HNXR 4DR4R 3T1YR 4DR2R 1FKAR 4JI6R 2UXDR 2ZM6R 4X65R 1HNWR 1G1XC 1I94R 2UUAR 1N36R 2UUCR 4DR7R 4JI2R 4B3MR 4JI8R 4DV0R 4LF5R 4B3RR 1J5ER 4YY3R 4LF6R 4JI4R 1IBKR 4NXMR 1XNQR 4DV6R 1HNZR 2F4VR 4JI1R 1N32R 5BR8R 4DR5R 4DV3R 4KHPR 1IBLR 4LF8R
chains in the Genus database with same CATH topology
4DV1R 4K0KR 2HHHR 5LMNR 4JI3R 4B3TR 4LFBR 2UXCR 4LFCR 2UXBR 4LF4R 4DUZR 2VQER 4X64R 4GKJR 4LF9R 2E5LR 2VQFR 4YHHR 1XMQR 1FJGR 4AQYR 1N34R 1XNRR 4DR6R 3OTOR 4JI0R 4JYAR 4DV4R 4X66R 2UUBR 4LF7R 4DV2R 1XMOR 3T1HR 2UU9R 1N33R 4DUYR 1IBMR 4JI7R 4JV5R 4NXNR 4DR3R 5LMUR 4DR1R 4B3SR 4LFAR 4X62R 4DV5R 4DV7R 4GKKR 4OX9R 4JI5R 1HR0R 1HNXR 4DR4R 3T1YR 4DR2R 1FKAR 4JI6R 2UXDR 2ZM6R 4X65R 1HNWR 1G1XC 1I94R 2UUAR 1N36R 2UUCR 4DR7R 4JI2R 4B3MR 4JI8R 4DV0R 4LF5R 4B3RR 1J5ER 4YY3R 4LF6R 4JI4R 1IBKR 4NXMR 1XNQR 4DV6R 1HNZR 2F4VR 4JI1R 1N32R 5BR8R 4DR5R 4DV3R 4KHPR 1IBLR 4LF8R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DV1 R;  4K0K R;  2HHH R;  5LMN R;  4JI3 R;  4B3T R;  4LFB R;  2UXC R;  4LFC R;  2UXB R;  4LF4 R;  4DUZ R;  2VQE R;  4X64 R;  4GKJ R;  4LF9 R;  2E5L R;  2VQF R;  4YHH R;  1XMQ R;  1FJG R;  4AQY R;  1N34 R;  1XNR R;  4DR6 R;  3OTO R;  4JI0 R;  4JYA R;  4DV4 R;  4X66 R;  2UUB R;  4LF7 R;  4DV2 R;  1XMO R;  3T1H R;  2UU9 R;  1N33 R;  4DUY R;  1IBM R;  4JI7 R;  4JV5 R;  4NXN R;  4DR3 R;  5LMU R;  4DR1 R;  4B3S R;  4LFA R;  4X62 R;  4DV5 R;  4DV7 R;  4GKK R;  4OX9 R;  4JI5 R;  1HR0 R;  1HNX R;  4DR4 R;  3T1Y R;  4DR2 R;  1FKA R;  4JI6 R;  2UXD R;  2ZM6 R;  4X65 R;  1HNW R;  1G1X C;  1I94 R;  2UUA R;  1N36 R;  2UUC R;  4DR7 R;  4JI2 R;  4B3M R;  4JI8 R;  4DV0 R;  4LF5 R;  4B3R R;  1J5E R;  4YY3 R;  4LF6 R;  4JI4 R;  1IBK R;  4NXM R;  1XNQ R;  4DV6 R;  1HNZ R;  2F4V R;  4JI1 R;  1N32 R;  5BR8 R;  4DR5 R;  4DV3 R;  4KHP R;  1IBL R;  4LF8 R; 
#chains in the Genus database with same CATH topology
 4DV1 R;  4K0K R;  2HHH R;  5LMN R;  4JI3 R;  4B3T R;  4LFB R;  2UXC R;  4LFC R;  2UXB R;  4LF4 R;  4DUZ R;  2VQE R;  4X64 R;  4GKJ R;  4LF9 R;  2E5L R;  2VQF R;  4YHH R;  1XMQ R;  1FJG R;  4AQY R;  1N34 R;  1XNR R;  4DR6 R;  3OTO R;  4JI0 R;  4JYA R;  4DV4 R;  4X66 R;  2UUB R;  4LF7 R;  4DV2 R;  1XMO R;  3T1H R;  2UU9 R;  1N33 R;  4DUY R;  1IBM R;  4JI7 R;  4JV5 R;  4NXN R;  4DR3 R;  5LMU R;  4DR1 R;  4B3S R;  4LFA R;  4X62 R;  4DV5 R;  4DV7 R;  4GKK R;  4OX9 R;  4JI5 R;  1HR0 R;  1HNX R;  4DR4 R;  3T1Y R;  4DR2 R;  1FKA R;  4JI6 R;  2UXD R;  2ZM6 R;  4X65 R;  1HNW R;  1G1X C;  1I94 R;  2UUA R;  1N36 R;  2UUC R;  4DR7 R;  4JI2 R;  4B3M R;  4JI8 R;  4DV0 R;  4LF5 R;  4B3R R;  1J5E R;  4YY3 R;  4LF6 R;  4JI4 R;  1IBK R;  4NXM R;  1XNQ R;  4DV6 R;  1HNZ R;  2F4V R;  4JI1 R;  1N32 R;  5BR8 R;  4DR5 R;  4DV3 R;  4KHP R;  1IBL R;  4LF8 R; 
#chains in the Genus database with same CATH homology
 4DV1 R;  4K0K R;  2HHH R;  5LMN R;  4JI3 R;  4B3T R;  4LFB R;  2UXC R;  4LFC R;  2UXB R;  4LF4 R;  4DUZ R;  2VQE R;  4X64 R;  4GKJ R;  4LF9 R;  2E5L R;  2VQF R;  4YHH R;  1XMQ R;  1FJG R;  4AQY R;  1N34 R;  1XNR R;  4DR6 R;  3OTO R;  4JI0 R;  4JYA R;  4DV4 R;  4X66 R;  2UUB R;  4LF7 R;  4DV2 R;  1XMO R;  3T1H R;  2UU9 R;  1N33 R;  4DUY R;  1IBM R;  4JI7 R;  4JV5 R;  4NXN R;  4DR3 R;  5LMU R;  4DR1 R;  4B3S R;  4LFA R;  4X62 R;  4DV5 R;  4DV7 R;  4GKK R;  4OX9 R;  4JI5 R;  1HR0 R;  1HNX R;  4DR4 R;  3T1Y R;  4DR2 R;  1FKA R;  4JI6 R;  2UXD R;  2ZM6 R;  4X65 R;  1HNW R;  1G1X C;  1I94 R;  2UUA R;  1N36 R;  2UUC R;  4DR7 R;  4JI2 R;  4B3M R;  4JI8 R;  4DV0 R;  4LF5 R;  4B3R R;  1J5E R;  4YY3 R;  4LF6 R;  4JI4 R;  1IBK R;  4NXM R;  1XNQ R;  4DV6 R;  1HNZ R;  2F4V R;  4JI1 R;  1N32 R;  5BR8 R;  4DR5 R;  4DV3 R;  4KHP R;  1IBL R;  4LF8 R; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...