The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
48
|
sequence length |
159
|
structure length |
159
|
Chain Sequence |
SSYGSRIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLINIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSITIVVSEETGGISLTKGGELFRDVSEEELHKILLKELVTVT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and Biochemical Analysis of the Essential Diadenylate Cyclase CdaA from Listeria monocytogenes.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Listeria monocytogenes egd-e
|
| molecule keywords |
Diadenylate cyclase
|
| total genus |
48
|
| structure length |
159
|
| sequence length |
159
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
2.7.7.85: Diadenylate cyclase. |
| pdb deposition date | 2014-11-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02457 | DisA_N | DisA bacterial checkpoint controller nucleotide-binding |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | YojJ-like (1 | DNA integrity scanning protein, DisA, N-terminal domain |
#chains in the Genus database with same CATH superfamily 3C23 A; 3C1Y A; 3C21 A; 4RV7 A; 4YXM A; 4YXJ A; 3C1Z A; 4YVZ A; 2FB5 A; #chains in the Genus database with same CATH topology 3C23 A; 3C1Y A; 3C21 A; 4RV7 A; 4YXM A; 4YXJ A; 3C1Z A; 4YVZ A; 2FB5 A; #chains in the Genus database with same CATH homology 3C23 A; 3C1Y A; 3C21 A; 4RV7 A; 4YXM A; 4YXJ A; 3C1Z A; 4YVZ A; 2FB5 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
