The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
88
|
sequence length |
353
|
structure length |
339
|
Chain Sequence |
VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNNTCINGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure-Based Design of a Small Molecule CD4-Antagonist with Broad Spectrum Anti-HIV-1 Activity.
pubmed doi rcsb |
| molecule keywords |
Envelope glycoprotein gp120
|
| molecule tags |
Viral protein
|
| source organism |
Human immunodeficiency virus 1
|
| total genus |
88
|
| structure length |
339
|
| sequence length |
353
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2014-12-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00516 | GP120 | Envelope glycoprotein GP120 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | HIV Envelope Protein Gp120; Chain G | Human immunodeficiency virus 1, Gp160, envelope glycoprotein |
#chains in the Genus database with same CATH superfamily 4JB9 G; 4XMP G; 4RFO G; 4XNY G; 4J6R G; 3SE9 G; 3IDY A; 5FA2 A; 3LQA G; 2NY3 A; 4OLW G; 3HI1 G; 2I5Y G; 5I9Q A; 4XVT G; 5T33 G; 4I53 A; 4DVV A; 4RFN A; 2NY2 A; 1G9M G; 4DVX A; 4P9H G; 1YYM G; 4OLY G; 4JPV G; 4RX4 E; 5TE6 G; 2I60 G; 4LSV G; 1RZK G; 4DKQ A; 2NY6 A; 4DVW A; 5TE4 G; 3FUS A; 5F4L A; 4RWY A; 3TGS A; 4XNZ A; 5F4P A; 5FEC C; 5F4R A; 1YYL G; 4JM2 E; 4DKU A; 4DKR A; 3TIH A; 4S1R G; 4R4N A; 3TGR A; 4YDL A; 4H8W G; 4LAJ A; 4OLV G; 4R4F A; 5F9W A; 4DKP A; 4JZZ A; 4DKV A; 2B4C G; 2NY0 A; 4YE4 G; 5F96 G; 4OM1 G; 3TGT A; 4LSR G; 4OLZ G; 2QAD A; 3JWO A; 2NY5 G; 4LST G; 2NY7 G; 4YDI G; 4XVS G; 4R2G A; 2BF1 A; 4I54 A; 4DKO A; 3U7Y G; 2NXY A; 4JKP G; 4S1Q G; 5CD5 A; 5CAY G; 4KA2 A; 4OLX G; 4DVR G; 4JDT G; 3TGQ A; 5F4U A; 4YFL E; 2NY1 A; 4OM0 G; 4LSQ G; 4JPW G; 4OLU G; 4YDJ G; 2NY4 A; 4LSU G; 3IDX G; 1GC1 G; 4JZW A; 3RJQ A; 4S1S G; 4K0A A; 4DVS A; 2NXZ A; 4RZ8 A; 3SE8 G; 4YDK G; 5IGX G; 3NGB A; 4DVT A; 4LSS G; 1G9N G; 5KJR G; 5F9O G; 1RZJ G; 3JWD A; 5TE7 G; 4LSP G; #chains in the Genus database with same CATH topology 4JB9 G; 4XMP G; 4RFO G; 4XNY G; 4J6R G; 3SE9 G; 3IDY A; 5FA2 A; 3LQA G; 2NY3 A; 4OLW G; 3HI1 G; 2I5Y G; 5I9Q A; 4XVT G; 5T33 G; 4I53 A; 4DVV A; 4RFN A; 2NY2 A; 1G9M G; 4DVX A; 4P9H G; 1YYM G; 4OLY G; 4JPV G; 4RX4 E; 5TE6 G; 2I60 G; 4LSV G; 1RZK G; 4DKQ A; 2NY6 A; 4DVW A; 5TE4 G; 3FUS A; 5F4L A; 4RWY A; 3TGS A; 4XNZ A; 5F4P A; 5FEC C; 5F4R A; 1YYL G; 4JM2 E; 4DKU A; 4DKR A; 3TIH A; 4S1R G; 4R4N A; 3TGR A; 4YDL A; 4H8W G; 4LAJ A; 4OLV G; 4R4F A; 5F9W A; 4DKP A; 4JZZ A; 4DKV A; 2B4C G; 2NY0 A; 4YE4 G; 5F96 G; 4OM1 G; 3TGT A; 4LSR G; 4OLZ G; 2QAD A; 3JWO A; 2NY5 G; 4LST G; 2NY7 G; 4YDI G; 4XVS G; 4R2G A; 2BF1 A; 4I54 A; 4DKO A; 3U7Y G; 2NXY A; 4JKP G; 4S1Q G; 5CD5 A; 5CAY G; 4KA2 A; 4OLX G; 4DVR G; 4JDT G; 3TGQ A; 5F4U A; 4YFL E; 2NY1 A; 4OM0 G; 4LSQ G; 4JPW G; 4OLU G; 4YDJ G; 2NY4 A; 4LSU G; 3IDX G; 1GC1 G; 4JZW A; 3RJQ A; 4S1S G; 4K0A A; 4DVS A; 2NXZ A; 4RZ8 A; 3SE8 G; 4YDK G; 5IGX G; 3NGB A; 4DVT A; 4LSS G; 1G9N G; 5KJR G; 5F9O G; 1RZJ G; 3JWD A; 5TE7 G; 4LSP G; #chains in the Genus database with same CATH homology 4JB9 G; 4XMP G; 4RFO G; 4XNY G; 4J6R G; 3SE9 G; 3IDY A; 5FA2 A; 3LQA G; 2NY3 A; 4OLW G; 3HI1 G; 2I5Y G; 5I9Q A; 4XVT G; 5T33 G; 4I53 A; 4DVV A; 4RFN A; 2NY2 A; 1G9M G; 4DVX A; 4P9H G; 1YYM G; 4OLY G; 4JPV G; 4RX4 E; 5TE6 G; 2I60 G; 4LSV G; 1RZK G; 4DKQ A; 2NY6 A; 4DVW A; 5TE4 G; 3FUS A; 5F4L A; 4RWY A; 3TGS A; 4XNZ A; 5F4P A; 5FEC C; 5F4R A; 1YYL G; 4JM2 E; 4DKU A; 4DKR A; 3TIH A; 4S1R G; 4R4N A; 3TGR A; 4YDL A; 4H8W G; 4LAJ A; 4OLV G; 4R4F A; 5F9W A; 4DKP A; 4JZZ A; 4DKV A; 2B4C G; 2NY0 A; 4YE4 G; 5F96 G; 4OM1 G; 3TGT A; 4LSR G; 4OLZ G; 2QAD A; 3JWO A; 2NY5 G; 4LST G; 2NY7 G; 4YDI G; 4XVS G; 4R2G A; 2BF1 A; 4I54 A; 4DKO A; 3U7Y G; 2NXY A; 4JKP G; 4S1Q G; 5CD5 A; 5CAY G; 4KA2 A; 4OLX G; 4DVR G; 4JDT G; 3TGQ A; 5F4U A; 4YFL E; 2NY1 A; 4OM0 G; 4LSQ G; 4JPW G; 4OLU G; 4YDJ G; 2NY4 A; 4LSU G; 3IDX G; 1GC1 G; 4JZW A; 3RJQ A; 4S1S G; 4K0A A; 4DVS A; 2NXZ A; 4RZ8 A; 3SE8 G; 4YDK G; 5IGX G; 3NGB A; 4DVT A; 4LSS G; 1G9N G; 5KJR G; 5F9O G; 1RZJ G; 3JWD A; 5TE7 G; 4LSP G;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
