4TNTA

Structure of the human mineralocorticoid receptor in complex with dna
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
72
structure length
72
Chain Sequence
SKICLVCGDEASGCHYGVVTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMNLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of the mineralocorticoid receptor DNA binding domain in complex with DNA.
pubmed doi rcsb
molecule keywords Mineralocorticoid receptor
molecule tags Dna binding protein/dna
source organism Homo sapiens
total genus 15
structure length 72
sequence length 72
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00105 zf-C4 Zinc finger, C4 type (two domains)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.50.10 Alpha Beta 2-Layer Sandwich Erythroid Transcription Factor GATA-1; Chain A Erythroid Transcription Factor GATA-1, subunit A 4tntA00
3G97A 6GATA 5E6BA 3VEKC 1HRAA 3G9MA 2ENVA 3E00D 4NQAB 1GNFA 1CITA 3FYLA 4OLNA 1GAUA 5EMPA 4AA6A 5E6AA 3M9EA 4CN3D 1RGDA 1GDCA 4TNTA 3DFXA 2HANA 5CBZA 4HC7A 1KB6A 4CN7A 2HANB 3VD6C 4HN5A 1R0OA 3G9PA 5E69A 4CN5A 1HCQA 1R0OB 5CC1A 1R4RA 3G6TA 3DFVC 1R4OA 5EMCA 3DZYA 4OORA 3G8UA 3G6PA 3DZYD 3G9JA 3G9IA 5L0MA 1YNWA 4TMAI 2NLLB 5CC0A 5E6CA 7GATA 2EBLA 1YNWB 4ONDA 2VUSI 5CBXA 1A6YA 4OV7A 5CBYA 1DSZB 1HCPA 2KAEA 4CN2C 1HLZA 1RXRA 1LO1A 1GA5A 2A66A 3G6QA 4IQRA 2FF0A 1GLUA 1R0NA 2VUUI 3E00A 1R0NB 1KB4A 2NLLA 5GATA 3G99A 2GATA 3G9OA 3G6UA 4HN6A 4GATA 2C7AA 1GATA 3G8XA 1DSZA 1BY4A 1LATA 3GATA 5EMQA 4HC9A 2M9WA 3G6RA 3DZUA 4CN3A 3CBBA 4HCAA 5KRBB 1KB2A 3DZUD 1R4IA 5E6DA 2VUTI 1LV3A 2GDAA
chains in the Genus database with same CATH superfamily
3G97A 6GATA 5E6BA 3VEKC 1HRAA 3G9MA 2ENVA 3E00D 4NQAB 1GNFA 1CITA 3FYLA 4OLNA 3G27A 1GAUA 5EMPA 4AA6A 5E6AA 3M9EA 4CN3D 1RGDA 1GDCA 4TNTA 3DFXA 2HANA 5CBZA 4HC7A 1KB6A 4CN7A 2HANB 3VD6C 4HN5A 1R0OA 3G9PA 5E69A 4CN5A 1HCQA 1R0OB 5CC1A 1R4RA 3G6TA 3DFVC 1R4OA 5EMCA 3DZYA 2DS8A 4OORA 3G8UA 3G6PA 3DZYD 3G9JA 3G9IA 5L0MA 1YNWA 4TMAI 2NLLB 5CC0A 5E6CA 7GATA 2EBLA 1YNWB 4ONDA 2VUSI 5CBXA 1A6YA 4OV7A 5CBYA 2DS6A 1DSZB 1HCPA 2KAEA 4CN2C 1HLZA 1RXRA 1LO1A 1GA5A 2A66A 3G6QA 4IQRA 2FF0A 1GLUA 1R0NA 2VUUI 3E00A 1R0NB 1KB4A 2NLLA 5GATA 3G99A 2GATA 3G9OA 3G6UA 4HN6A 4GATA 2C7AA 2DS5A 1GATA 3G8XA 1DSZA 1BY4A 1LATA 3GATA 5EMQA 4HC9A 2M9WA 3G6RA 3DZUA 4CN3A 3CBBA 4HCAA 5KRBB 1KB2A 3DZUD 1R4IA 5E6DA 2VUTI 1LV3A 2GDAA
chains in the Genus database with same CATH topology
3G97A 6GATA 5E6BA 3VEKC 1HRAA 3G9MA 2ENVA 3E00D 4NQAB 1GNFA 1CITA 3FYLA 4OLNA 1GAUA 5EMPA 4AA6A 5E6AA 3M9EA 4CN3D 1RGDA 1GDCA 4TNTA 3DFXA 2HANA 5CBZA 4HC7A 1KB6A 4CN7A 2HANB 3VD6C 4HN5A 1R0OA 3G9PA 5E69A 4CN5A 1HCQA 1R0OB 5CC1A 1R4RA 3G6TA 3DFVC 1R4OA 5EMCA 3DZYA 4OORA 3G8UA 3G6PA 3DZYD 3G9JA 3G9IA 5L0MA 1YNWA 4TMAI 2NLLB 5CC0A 5E6CA 7GATA 2EBLA 1YNWB 4ONDA 2VUSI 5CBXA 1A6YA 4OV7A 5CBYA 1DSZB 1HCPA 2KAEA 4CN2C 1HLZA 1RXRA 1LO1A 1GA5A 2A66A 3G6QA 4IQRA 2FF0A 1GLUA 1R0NA 2VUUI 3E00A 1R0NB 1KB4A 2NLLA 5GATA 3G99A 2GATA 3G9OA 3G6UA 4HN6A 4GATA 2C7AA 1GATA 3G8XA 1DSZA 1BY4A 1LATA 3GATA 5EMQA 4HC9A 2M9WA 3G6RA 3DZUA 4CN3A 3CBBA 4HCAA 5KRBB 1KB2A 3DZUD 1R4IA 5E6DA 2VUTI 1LV3A 2GDAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G97 A;  6GAT A;  5E6B A;  3VEK C;  1HRA A;  3G9M A;  2ENV A;  3E00 D;  4NQA B;  1GNF A;  1CIT A;  3FYL A;  4OLN A;  1GAU A;  5EMP A;  4AA6 A;  5E6A A;  3M9E A;  4CN3 D;  1RGD A;  1GDC A;  4TNT A;  3DFX A;  2HAN A;  5CBZ A;  4HC7 A;  1KB6 A;  4CN7 A;  2HAN B;  3VD6 C;  4HN5 A;  1R0O A;  3G9P A;  5E69 A;  4CN5 A;  1HCQ A;  1R0O B;  5CC1 A;  1R4R A;  3G6T A;  3DFV C;  1R4O A;  5EMC A;  3DZY A;  4OOR A;  3G8U A;  3G6P A;  3DZY D;  3G9J A;  3G9I A;  5L0M A;  1YNW A;  4TMA I;  2NLL B;  5CC0 A;  5E6C A;  7GAT A;  2EBL A;  1YNW B;  4OND A;  2VUS I;  5CBX A;  1A6Y A;  4OV7 A;  5CBY A;  1DSZ B;  1HCP A;  2KAE A;  4CN2 C;  1HLZ A;  1RXR A;  1LO1 A;  1GA5 A;  2A66 A;  3G6Q A;  4IQR A;  2FF0 A;  1GLU A;  1R0N A;  2VUU I;  3E00 A;  1R0N B;  1KB4 A;  2NLL A;  5GAT A;  3G99 A;  2GAT A;  3G9O A;  3G6U A;  4HN6 A;  4GAT A;  2C7A A;  1GAT A;  3G8X A;  1DSZ A;  1BY4 A;  1LAT A;  3GAT A;  5EMQ A;  4HC9 A;  2M9W A;  3G6R A;  3DZU A;  4CN3 A;  3CBB A;  4HCA A;  5KRB B;  1KB2 A;  3DZU D;  1R4I A;  5E6D A;  2VUT I;  1LV3 A;  2GDA A; 
#chains in the Genus database with same CATH topology
 3G97 A;  6GAT A;  5E6B A;  3VEK C;  1HRA A;  3G9M A;  2ENV A;  3E00 D;  4NQA B;  1GNF A;  1CIT A;  3FYL A;  4OLN A;  3G27 A;  1GAU A;  5EMP A;  4AA6 A;  5E6A A;  3M9E A;  4CN3 D;  1RGD A;  1GDC A;  4TNT A;  3DFX A;  2HAN A;  5CBZ A;  4HC7 A;  1KB6 A;  4CN7 A;  2HAN B;  3VD6 C;  4HN5 A;  1R0O A;  3G9P A;  5E69 A;  4CN5 A;  1HCQ A;  1R0O B;  5CC1 A;  1R4R A;  3G6T A;  3DFV C;  1R4O A;  5EMC A;  3DZY A;  2DS8 A;  4OOR A;  3G8U A;  3G6P A;  3DZY D;  3G9J A;  3G9I A;  5L0M A;  1YNW A;  4TMA I;  2NLL B;  5CC0 A;  5E6C A;  7GAT A;  2EBL A;  1YNW B;  4OND A;  2VUS I;  5CBX A;  1A6Y A;  4OV7 A;  5CBY A;  2DS6 A;  1DSZ B;  1HCP A;  2KAE A;  4CN2 C;  1HLZ A;  1RXR A;  1LO1 A;  1GA5 A;  2A66 A;  3G6Q A;  4IQR A;  2FF0 A;  1GLU A;  1R0N A;  2VUU I;  3E00 A;  1R0N B;  1KB4 A;  2NLL A;  5GAT A;  3G99 A;  2GAT A;  3G9O A;  3G6U A;  4HN6 A;  4GAT A;  2C7A A;  2DS5 A;  1GAT A;  3G8X A;  1DSZ A;  1BY4 A;  1LAT A;  3GAT A;  5EMQ A;  4HC9 A;  2M9W A;  3G6R A;  3DZU A;  4CN3 A;  3CBB A;  4HCA A;  5KRB B;  1KB2 A;  3DZU D;  1R4I A;  5E6D A;  2VUT I;  1LV3 A;  2GDA A; 
#chains in the Genus database with same CATH homology
 3G97 A;  6GAT A;  5E6B A;  3VEK C;  1HRA A;  3G9M A;  2ENV A;  3E00 D;  4NQA B;  1GNF A;  1CIT A;  3FYL A;  4OLN A;  1GAU A;  5EMP A;  4AA6 A;  5E6A A;  3M9E A;  4CN3 D;  1RGD A;  1GDC A;  4TNT A;  3DFX A;  2HAN A;  5CBZ A;  4HC7 A;  1KB6 A;  4CN7 A;  2HAN B;  3VD6 C;  4HN5 A;  1R0O A;  3G9P A;  5E69 A;  4CN5 A;  1HCQ A;  1R0O B;  5CC1 A;  1R4R A;  3G6T A;  3DFV C;  1R4O A;  5EMC A;  3DZY A;  4OOR A;  3G8U A;  3G6P A;  3DZY D;  3G9J A;  3G9I A;  5L0M A;  1YNW A;  4TMA I;  2NLL B;  5CC0 A;  5E6C A;  7GAT A;  2EBL A;  1YNW B;  4OND A;  2VUS I;  5CBX A;  1A6Y A;  4OV7 A;  5CBY A;  1DSZ B;  1HCP A;  2KAE A;  4CN2 C;  1HLZ A;  1RXR A;  1LO1 A;  1GA5 A;  2A66 A;  3G6Q A;  4IQR A;  2FF0 A;  1GLU A;  1R0N A;  2VUU I;  3E00 A;  1R0N B;  1KB4 A;  2NLL A;  5GAT A;  3G99 A;  2GAT A;  3G9O A;  3G6U A;  4HN6 A;  4GAT A;  2C7A A;  1GAT A;  3G8X A;  1DSZ A;  1BY4 A;  1LAT A;  3GAT A;  5EMQ A;  4HC9 A;  2M9W A;  3G6R A;  3DZU A;  4CN3 A;  3CBB A;  4HCA A;  5KRB B;  1KB2 A;  3DZU D;  1R4I A;  5E6D A;  2VUT I;  1LV3 A;  2GDA A; 
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