4DR4R

Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with codon, cognate transfer rna anticodon stem-loop and multiple copies of paromomycin molecules bound
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
73
structure length
73
Chain Sequence
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 16S rRNA
publication title A structural basis for streptomycin-induced misreading of the genetic code.
pubmed doi rcsb
total genus 17
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2012-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01084 Ribosomal_S18 Ribosomal protein S18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18 4dr4R00
1XMQR 3T1HR 3T1YR 4DV1R 4JI0R 4YY3R 4DV7R 1N33R 4JI4R 4LFCR 4YHHR 2VQER 4DR1R 2UU9R 4DR7R 4X66R 4LF4R 4JV5R 5LMNR 1N32R 4X64R 4B3SR 2UUAR 1XNQR 2F4VR 3OTOR 4DUZR 1N34R 1HR0R 4JI7R 2UXDR 2HHHR 4LF7R 4DR3R 4X62R 4LFAR 4DUYR 1FKAR 4LF9R 4DR4R 2VQFR 5LMUR 4DV0R 4JI3R 1IBKR 4DV6R 1I94R 4DV3R 1G1XC 4B3TR 4JI1R 4GKKR 4LFBR 1HNXR 1N36R 4JI2R 1IBLR 4B3MR 2UUBR 4K0KR 4JI8R 4JI5R 4NXNR 4DV2R 4LF6R 2UXBR 2UUCR 5BR8R 1IBMR 4AQYR 4GKJR 4JYAR 1J5ER 4DR2R 1FJGR 1HNWR 1XNRR 2UXCR 4JI6R 4LF8R 4NXMR 4B3RR 4LF5R 2E5LR 4DV5R 4X65R 1HNZR 4DR5R 4KHPR 1XMOR 4DR6R 2ZM6R 4DV4R 4OX9R
chains in the Genus database with same CATH superfamily
1XMQR 3T1HR 3T1YR 4DV1R 4JI0R 4YY3R 4DV7R 1N33R 4JI4R 4LFCR 4YHHR 2VQER 4DR1R 2UU9R 4DR7R 4X66R 4LF4R 4JV5R 5LMNR 1N32R 4X64R 4B3SR 2UUAR 1XNQR 2F4VR 3OTOR 4DUZR 1N34R 1HR0R 4JI7R 2UXDR 2HHHR 4LF7R 4DR3R 4X62R 4LFAR 4DUYR 1FKAR 4LF9R 4DR4R 2VQFR 5LMUR 4DV0R 4JI3R 1IBKR 4DV6R 1I94R 4DV3R 1G1XC 4B3TR 4JI1R 4GKKR 4LFBR 1HNXR 1N36R 4JI2R 1IBLR 4B3MR 2UUBR 4K0KR 4JI8R 4JI5R 4NXNR 4DV2R 4LF6R 2UXBR 2UUCR 5BR8R 1IBMR 4AQYR 4GKJR 4JYAR 1J5ER 4DR2R 1FJGR 1HNWR 1XNRR 2UXCR 4JI6R 4LF8R 4NXMR 4B3RR 4LF5R 2E5LR 4DV5R 4X65R 1HNZR 4DR5R 4KHPR 1XMOR 4DR6R 2ZM6R 4DV4R 4OX9R
chains in the Genus database with same CATH topology
1XMQR 3T1HR 3T1YR 4DV1R 4JI0R 4YY3R 4DV7R 1N33R 4JI4R 4LFCR 4YHHR 2VQER 4DR1R 2UU9R 4DR7R 4X66R 4LF4R 4JV5R 5LMNR 1N32R 4X64R 4B3SR 2UUAR 1XNQR 2F4VR 3OTOR 4DUZR 1N34R 1HR0R 4JI7R 2UXDR 2HHHR 4LF7R 4DR3R 4X62R 4LFAR 4DUYR 1FKAR 4LF9R 4DR4R 2VQFR 5LMUR 4DV0R 4JI3R 1IBKR 4DV6R 1I94R 4DV3R 1G1XC 4B3TR 4JI1R 4GKKR 4LFBR 1HNXR 1N36R 4JI2R 1IBLR 4B3MR 2UUBR 4K0KR 4JI8R 4JI5R 4NXNR 4DV2R 4LF6R 2UXBR 2UUCR 5BR8R 1IBMR 4AQYR 4GKJR 4JYAR 1J5ER 4DR2R 1FJGR 1HNWR 1XNRR 2UXCR 4JI6R 4LF8R 4NXMR 4B3RR 4LF5R 2E5LR 4DV5R 4X65R 1HNZR 4DR5R 4KHPR 1XMOR 4DR6R 2ZM6R 4DV4R 4OX9R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XMQ R;  3T1H R;  3T1Y R;  4DV1 R;  4JI0 R;  4YY3 R;  4DV7 R;  1N33 R;  4JI4 R;  4LFC R;  4YHH R;  2VQE R;  4DR1 R;  2UU9 R;  4DR7 R;  4X66 R;  4LF4 R;  4JV5 R;  5LMN R;  1N32 R;  4X64 R;  4B3S R;  2UUA R;  1XNQ R;  2F4V R;  3OTO R;  4DUZ R;  1N34 R;  1HR0 R;  4JI7 R;  2UXD R;  2HHH R;  4LF7 R;  4DR3 R;  4X62 R;  4LFA R;  4DUY R;  1FKA R;  4LF9 R;  4DR4 R;  2VQF R;  5LMU R;  4DV0 R;  4JI3 R;  1IBK R;  4DV6 R;  1I94 R;  4DV3 R;  1G1X C;  4B3T R;  4JI1 R;  4GKK R;  4LFB R;  1HNX R;  1N36 R;  4JI2 R;  1IBL R;  4B3M R;  2UUB R;  4K0K R;  4JI8 R;  4JI5 R;  4NXN R;  4DV2 R;  4LF6 R;  2UXB R;  2UUC R;  5BR8 R;  1IBM R;  4AQY R;  4GKJ R;  4JYA R;  1J5E R;  4DR2 R;  1FJG R;  1HNW R;  1XNR R;  2UXC R;  4JI6 R;  4LF8 R;  4NXM R;  4B3R R;  4LF5 R;  2E5L R;  4DV5 R;  4X65 R;  1HNZ R;  4DR5 R;  4KHP R;  1XMO R;  4DR6 R;  2ZM6 R;  4DV4 R;  4OX9 R; 
#chains in the Genus database with same CATH topology
 1XMQ R;  3T1H R;  3T1Y R;  4DV1 R;  4JI0 R;  4YY3 R;  4DV7 R;  1N33 R;  4JI4 R;  4LFC R;  4YHH R;  2VQE R;  4DR1 R;  2UU9 R;  4DR7 R;  4X66 R;  4LF4 R;  4JV5 R;  5LMN R;  1N32 R;  4X64 R;  4B3S R;  2UUA R;  1XNQ R;  2F4V R;  3OTO R;  4DUZ R;  1N34 R;  1HR0 R;  4JI7 R;  2UXD R;  2HHH R;  4LF7 R;  4DR3 R;  4X62 R;  4LFA R;  4DUY R;  1FKA R;  4LF9 R;  4DR4 R;  2VQF R;  5LMU R;  4DV0 R;  4JI3 R;  1IBK R;  4DV6 R;  1I94 R;  4DV3 R;  1G1X C;  4B3T R;  4JI1 R;  4GKK R;  4LFB R;  1HNX R;  1N36 R;  4JI2 R;  1IBL R;  4B3M R;  2UUB R;  4K0K R;  4JI8 R;  4JI5 R;  4NXN R;  4DV2 R;  4LF6 R;  2UXB R;  2UUC R;  5BR8 R;  1IBM R;  4AQY R;  4GKJ R;  4JYA R;  1J5E R;  4DR2 R;  1FJG R;  1HNW R;  1XNR R;  2UXC R;  4JI6 R;  4LF8 R;  4NXM R;  4B3R R;  4LF5 R;  2E5L R;  4DV5 R;  4X65 R;  1HNZ R;  4DR5 R;  4KHP R;  1XMO R;  4DR6 R;  2ZM6 R;  4DV4 R;  4OX9 R; 
#chains in the Genus database with same CATH homology
 1XMQ R;  3T1H R;  3T1Y R;  4DV1 R;  4JI0 R;  4YY3 R;  4DV7 R;  1N33 R;  4JI4 R;  4LFC R;  4YHH R;  2VQE R;  4DR1 R;  2UU9 R;  4DR7 R;  4X66 R;  4LF4 R;  4JV5 R;  5LMN R;  1N32 R;  4X64 R;  4B3S R;  2UUA R;  1XNQ R;  2F4V R;  3OTO R;  4DUZ R;  1N34 R;  1HR0 R;  4JI7 R;  2UXD R;  2HHH R;  4LF7 R;  4DR3 R;  4X62 R;  4LFA R;  4DUY R;  1FKA R;  4LF9 R;  4DR4 R;  2VQF R;  5LMU R;  4DV0 R;  4JI3 R;  1IBK R;  4DV6 R;  1I94 R;  4DV3 R;  1G1X C;  4B3T R;  4JI1 R;  4GKK R;  4LFB R;  1HNX R;  1N36 R;  4JI2 R;  1IBL R;  4B3M R;  2UUB R;  4K0K R;  4JI8 R;  4JI5 R;  4NXN R;  4DV2 R;  4LF6 R;  2UXB R;  2UUC R;  5BR8 R;  1IBM R;  4AQY R;  4GKJ R;  4JYA R;  1J5E R;  4DR2 R;  1FJG R;  1HNW R;  1XNR R;  2UXC R;  4JI6 R;  4LF8 R;  4NXM R;  4B3R R;  4LF5 R;  2E5L R;  4DV5 R;  4X65 R;  1HNZ R;  4DR5 R;  4KHP R;  1XMO R;  4DR6 R;  2ZM6 R;  4DV4 R;  4OX9 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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