4NWQB

Computationally designed two-component self-assembling tetrahedral cage, t33-21, crystallized in space group f4132
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
121
structure length
121
Chain Sequence
PHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI2 (110-113)TI1 (9-12)AH2 (74-91)S2 (12-14)AH1 (18-31)S3 (41-47)TVIII1 (47-50)S4 (61-69)S6 (101-109)TIV2 (118-121)S1 (3-9)S5 (92-95)3H1 (37-39)TIV1 (14-17)Updating...
connected with : NaN
molecule tags Protein binding
source organism Pyrococcus horikoshii
publication title Accurate design of co-assembling multi-component protein nanomaterials.
pubmed doi rcsb
molecule keywords Putative uncharacterized protein PH0671
total genus 33
structure length 121
sequence length 121
ec nomenclature
pdb deposition date 2013-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02962 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.429.10 Alpha Beta 2-Layer Sandwich Macrophage Migration Inhibitory Factor Macrophage Migration Inhibitory Factor 4nwqB00
1OTGA 2OS5A 3JSFA 5J7PA 5BS9A 3FWTA 5BSCA 4OSFA 3MB2B 3IJJA 4FAZA 4EUIA 3L5TA 3RF5A 5HVVA 2X4KA 1CA7A 4GRNA 3GACA 3MF7A 2OPAA 4DH4A 1MWWA 3CE4A 4LHOA 3L5SA 1BJPA 4P0HA 3HOFA 4NWQB 4P01A 3DJIA 4OTBA 1FIMA 5CLOA 3N4HA 2WKFA 2GDGA 3B64A 4X1CA 3N4GA 4K9GA 4PLUA 4OYQA 2FM7A 2OOWA 3MB2A 1MFIA 4JJ9A 4M1AA 4P7MA 4Z15A 3MJZA 4GUMA 1CGQA 3KERA 4GRRA 2AAJA 4X1CC 4F2KA 1P1GA 4U5RA 3WNRA 4TRFA 4EVGA 4WR8A 1GIFA 5BSJA 4LHPA 3L5UA 3IJGA 4GROA 3E6QA 1MIFA 3WNTA 3B9SA 3KANA 3MLCA 3L5PA 4JCUA 3JSGA 1GD0A 3ABFA 3T5SA 4WRBA 1U9DA 5HVTA 1GYYA 3GADA 4PKKA 1DPTA 4P7SA 2OOHA 1MFFA 3FWUA 3EJ7B 4PKZA 4FDXA 3L5VA 2OOZA 5EIZA 2OP8A 1UIZA 3SMCA 2FLTA 3M21A 3M20A 3C6VA 2AALA 2XCZA 4Q3FA 1S0YB 1LJTA 1S0YA 4GRQA 3RY0A 4GRUA 4Z1UA 5HVSA 4GRPA 4Z1TA 4OTAA 2ORMA 4LKBA 1GYXA 3EJ3B 3RF4A 3EJ3A 3DJHA 4OTCA 4XX8A 5B4OA 4NWPE 2FLZA 3MF8A 4X19A 1GYJA 1HFOA 3EJ9B 3N4DA 3L5RA 3EJ9A 3EJ7A 4TRUA 5BSIA 2WKBA 3SMBA 1GCZA 4XX7A 5CLNA 3WNSA 2WKFB 3JTUA 4U5PA 3U18A 2AAGA 5J7QA 4ETGA 1OTFA
chains in the Genus database with same CATH superfamily
1OTGA 2OS5A 3JSFA 5J7PA 5BS9A 3FWTA 5BSCA 4OSFA 3MB2B 3IJJA 4FAZA 4EUIA 3L5TA 3RF5A 5HVVA 2X4KA 1CA7A 4GRNA 3GACA 3MF7A 2OPAA 4DH4A 1MWWA 3CE4A 4LHOA 3L5SA 1BJPA 4P0HA 3HOFA 4NWQB 4P01A 3DJIA 4OTBA 1FIMA 5CLOA 3N4HA 2WKFA 2GDGA 3B64A 4X1CA 3N4GA 4K9GA 4PLUA 4OYQA 2FM7A 2OOWA 3MB2A 1MFIA 4JJ9A 4M1AA 4P7MA 4Z15A 3MJZA 4GUMA 1CGQA 3KERA 4GRRA 2AAJA 4X1CC 4F2KA 1P1GA 4U5RA 3WNRA 4TRFA 4EVGA 4WR8A 1GIFA 5BSJA 4LHPA 3L5UA 3IJGA 4GROA 3E6QA 1MIFA 3WNTA 3B9SA 3KANA 3MLCA 3L5PA 4JCUA 3JSGA 1GD0A 3ABFA 3T5SA 4WRBA 1U9DA 5HVTA 1GYYA 3GADA 4PKKA 1DPTA 4P7SA 2OOHA 1MFFA 3FWUA 3EJ7B 4PKZA 4FDXA 3L5VA 2OOZA 5EIZA 2OP8A 1UIZA 3SMCA 2FLTA 3M21A 3M20A 3C6VA 2AALA 2XCZA 4Q3FA 1S0YB 1LJTA 1S0YA 4GRQA 3RY0A 4GRUA 4Z1UA 5HVSA 4GRPA 4Z1TA 4OTAA 2ORMA 4LKBA 1GYXA 3EJ3B 3RF4A 3EJ3A 3DJHA 4OTCA 4XX8A 5B4OA 4NWPE 2FLZA 3MF8A 4X19A 1GYJA 1HFOA 3EJ9B 3N4DA 3L5RA 3EJ9A 3EJ7A 4TRUA 5BSIA 2WKBA 3SMBA 1GCZA 4XX7A 5CLNA 3WNSA 2WKFB 3JTUA 4U5PA 3U18A 2AAGA 5J7QA 4ETGA 1OTFA
chains in the Genus database with same CATH topology
1OTGA 2OS5A 3JSFA 5J7PA 5BS9A 3FWTA 5BSCA 4OSFA 3MB2B 3IJJA 4FAZA 4EUIA 3L5TA 3RF5A 5HVVA 2X4KA 1CA7A 4GRNA 3GACA 3MF7A 2OPAA 4DH4A 1MWWA 3CE4A 4LHOA 3L5SA 1BJPA 4P0HA 3HOFA 4NWQB 4P01A 3DJIA 4OTBA 1FIMA 5CLOA 3N4HA 2WKFA 2GDGA 3B64A 4X1CA 3N4GA 4K9GA 4PLUA 4OYQA 2FM7A 2OOWA 3MB2A 1MFIA 4JJ9A 4M1AA 4P7MA 4Z15A 3MJZA 4GUMA 1CGQA 3KERA 4GRRA 2AAJA 4X1CC 4F2KA 1P1GA 4U5RA 3WNRA 4TRFA 4EVGA 4WR8A 1GIFA 5BSJA 4LHPA 3L5UA 3IJGA 4GROA 3E6QA 1MIFA 3WNTA 3B9SA 3KANA 3MLCA 3L5PA 4JCUA 3JSGA 1GD0A 3ABFA 3T5SA 4WRBA 1U9DA 5HVTA 1GYYA 3GADA 4PKKA 1DPTA 4P7SA 2OOHA 1MFFA 3FWUA 3EJ7B 4PKZA 4FDXA 3L5VA 2OOZA 5EIZA 2OP8A 1UIZA 3SMCA 2FLTA 3M21A 3M20A 3C6VA 2AALA 2XCZA 4Q3FA 1S0YB 1LJTA 1S0YA 4GRQA 3RY0A 4GRUA 4Z1UA 5HVSA 4GRPA 4Z1TA 4OTAA 2ORMA 4LKBA 1GYXA 3EJ3B 3RF4A 3EJ3A 3DJHA 4OTCA 4XX8A 5B4OA 4NWPE 2FLZA 3MF8A 4X19A 1GYJA 1HFOA 3EJ9B 3N4DA 3L5RA 3EJ9A 3EJ7A 4TRUA 5BSIA 2WKBA 3SMBA 1GCZA 4XX7A 5CLNA 3WNSA 2WKFB 3JTUA 4U5PA 3U18A 2AAGA 5J7QA 4ETGA 1OTFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OTG A;  2OS5 A;  3JSF A;  5J7P A;  5BS9 A;  3FWT A;  5BSC A;  4OSF A;  3MB2 B;  3IJJ A;  4FAZ A;  4EUI A;  3L5T A;  3RF5 A;  5HVV A;  2X4K A;  1CA7 A;  4GRN A;  3GAC A;  3MF7 A;  2OPA A;  4DH4 A;  1MWW A;  3CE4 A;  4LHO A;  3L5S A;  1BJP A;  4P0H A;  3HOF A;  4NWQ B;  4P01 A;  3DJI A;  4OTB A;  1FIM A;  5CLO A;  3N4H A;  2WKF A;  2GDG A;  3B64 A;  4X1C A;  3N4G A;  4K9G A;  4PLU A;  4OYQ A;  2FM7 A;  2OOW A;  3MB2 A;  1MFI A;  4JJ9 A;  4M1A A;  4P7M A;  4Z15 A;  3MJZ A;  4GUM A;  1CGQ A;  3KER A;  4GRR A;  2AAJ A;  4X1C C;  4F2K A;  1P1G A;  4U5R A;  3WNR A;  4TRF A;  4EVG A;  4WR8 A;  1GIF A;  5BSJ A;  4LHP A;  3L5U A;  3IJG A;  4GRO A;  3E6Q A;  1MIF A;  3WNT A;  3B9S A;  3KAN A;  3MLC A;  3L5P A;  4JCU A;  3JSG A;  1GD0 A;  3ABF A;  3T5S A;  4WRB A;  1U9D A;  5HVT A;  1GYY A;  3GAD A;  4PKK A;  1DPT A;  4P7S A;  2OOH A;  1MFF A;  3FWU A;  3EJ7 B;  4PKZ A;  4FDX A;  3L5V A;  2OOZ A;  5EIZ A;  2OP8 A;  1UIZ A;  3SMC A;  2FLT A;  3M21 A;  3M20 A;  3C6V A;  2AAL A;  2XCZ A;  4Q3F A;  1S0Y B;  1LJT A;  1S0Y A;  4GRQ A;  3RY0 A;  4GRU A;  4Z1U A;  5HVS A;  4GRP A;  4Z1T A;  4OTA A;  2ORM A;  4LKB A;  1GYX A;  3EJ3 B;  3RF4 A;  3EJ3 A;  3DJH A;  4OTC A;  4XX8 A;  5B4O A;  4NWP E;  2FLZ A;  3MF8 A;  4X19 A;  1GYJ A;  1HFO A;  3EJ9 B;  3N4D A;  3L5R A;  3EJ9 A;  3EJ7 A;  4TRU A;  5BSI A;  2WKB A;  3SMB A;  1GCZ A;  4XX7 A;  5CLN A;  3WNS A;  2WKF B;  3JTU A;  4U5P A;  3U18 A;  2AAG A;  5J7Q A;  4ETG A;  1OTF A; 
#chains in the Genus database with same CATH topology
 1OTG A;  2OS5 A;  3JSF A;  5J7P A;  5BS9 A;  3FWT A;  5BSC A;  4OSF A;  3MB2 B;  3IJJ A;  4FAZ A;  4EUI A;  3L5T A;  3RF5 A;  5HVV A;  2X4K A;  1CA7 A;  4GRN A;  3GAC A;  3MF7 A;  2OPA A;  4DH4 A;  1MWW A;  3CE4 A;  4LHO A;  3L5S A;  1BJP A;  4P0H A;  3HOF A;  4NWQ B;  4P01 A;  3DJI A;  4OTB A;  1FIM A;  5CLO A;  3N4H A;  2WKF A;  2GDG A;  3B64 A;  4X1C A;  3N4G A;  4K9G A;  4PLU A;  4OYQ A;  2FM7 A;  2OOW A;  3MB2 A;  1MFI A;  4JJ9 A;  4M1A A;  4P7M A;  4Z15 A;  3MJZ A;  4GUM A;  1CGQ A;  3KER A;  4GRR A;  2AAJ A;  4X1C C;  4F2K A;  1P1G A;  4U5R A;  3WNR A;  4TRF A;  4EVG A;  4WR8 A;  1GIF A;  5BSJ A;  4LHP A;  3L5U A;  3IJG A;  4GRO A;  3E6Q A;  1MIF A;  3WNT A;  3B9S A;  3KAN A;  3MLC A;  3L5P A;  4JCU A;  3JSG A;  1GD0 A;  3ABF A;  3T5S A;  4WRB A;  1U9D A;  5HVT A;  1GYY A;  3GAD A;  4PKK A;  1DPT A;  4P7S A;  2OOH A;  1MFF A;  3FWU A;  3EJ7 B;  4PKZ A;  4FDX A;  3L5V A;  2OOZ A;  5EIZ A;  2OP8 A;  1UIZ A;  3SMC A;  2FLT A;  3M21 A;  3M20 A;  3C6V A;  2AAL A;  2XCZ A;  4Q3F A;  1S0Y B;  1LJT A;  1S0Y A;  4GRQ A;  3RY0 A;  4GRU A;  4Z1U A;  5HVS A;  4GRP A;  4Z1T A;  4OTA A;  2ORM A;  4LKB A;  1GYX A;  3EJ3 B;  3RF4 A;  3EJ3 A;  3DJH A;  4OTC A;  4XX8 A;  5B4O A;  4NWP E;  2FLZ A;  3MF8 A;  4X19 A;  1GYJ A;  1HFO A;  3EJ9 B;  3N4D A;  3L5R A;  3EJ9 A;  3EJ7 A;  4TRU A;  5BSI A;  2WKB A;  3SMB A;  1GCZ A;  4XX7 A;  5CLN A;  3WNS A;  2WKF B;  3JTU A;  4U5P A;  3U18 A;  2AAG A;  5J7Q A;  4ETG A;  1OTF A; 
#chains in the Genus database with same CATH homology
 1OTG A;  2OS5 A;  3JSF A;  5J7P A;  5BS9 A;  3FWT A;  5BSC A;  4OSF A;  3MB2 B;  3IJJ A;  4FAZ A;  4EUI A;  3L5T A;  3RF5 A;  5HVV A;  2X4K A;  1CA7 A;  4GRN A;  3GAC A;  3MF7 A;  2OPA A;  4DH4 A;  1MWW A;  3CE4 A;  4LHO A;  3L5S A;  1BJP A;  4P0H A;  3HOF A;  4NWQ B;  4P01 A;  3DJI A;  4OTB A;  1FIM A;  5CLO A;  3N4H A;  2WKF A;  2GDG A;  3B64 A;  4X1C A;  3N4G A;  4K9G A;  4PLU A;  4OYQ A;  2FM7 A;  2OOW A;  3MB2 A;  1MFI A;  4JJ9 A;  4M1A A;  4P7M A;  4Z15 A;  3MJZ A;  4GUM A;  1CGQ A;  3KER A;  4GRR A;  2AAJ A;  4X1C C;  4F2K A;  1P1G A;  4U5R A;  3WNR A;  4TRF A;  4EVG A;  4WR8 A;  1GIF A;  5BSJ A;  4LHP A;  3L5U A;  3IJG A;  4GRO A;  3E6Q A;  1MIF A;  3WNT A;  3B9S A;  3KAN A;  3MLC A;  3L5P A;  4JCU A;  3JSG A;  1GD0 A;  3ABF A;  3T5S A;  4WRB A;  1U9D A;  5HVT A;  1GYY A;  3GAD A;  4PKK A;  1DPT A;  4P7S A;  2OOH A;  1MFF A;  3FWU A;  3EJ7 B;  4PKZ A;  4FDX A;  3L5V A;  2OOZ A;  5EIZ A;  2OP8 A;  1UIZ A;  3SMC A;  2FLT A;  3M21 A;  3M20 A;  3C6V A;  2AAL A;  2XCZ A;  4Q3F A;  1S0Y B;  1LJT A;  1S0Y A;  4GRQ A;  3RY0 A;  4GRU A;  4Z1U A;  5HVS A;  4GRP A;  4Z1T A;  4OTA A;  2ORM A;  4LKB A;  1GYX A;  3EJ3 B;  3RF4 A;  3EJ3 A;  3DJH A;  4OTC A;  4XX8 A;  5B4O A;  4NWP E;  2FLZ A;  3MF8 A;  4X19 A;  1GYJ A;  1HFO A;  3EJ9 B;  3N4D A;  3L5R A;  3EJ9 A;  3EJ7 A;  4TRU A;  5BSI A;  2WKB A;  3SMB A;  1GCZ A;  4XX7 A;  5CLN A;  3WNS A;  2WKF B;  3JTU A;  4U5P A;  3U18 A;  2AAG A;  5J7Q A;  4ETG A;  1OTF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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