4OX9N

Crystal structure of the aminoglycoside resistance methyltransferase npma bound to the 30s ribosomal subunit
Total Genus 7
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
source organism Escherichia coli
molecule keywords 16S rRNA
total genus 7
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2014-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4ox9N00
5A2Qd 4LF4N 4DV6N 4B3SN 1IBKN 1XNQN 3J81d 4LF5N 5IT9d 1XMQN 4LF6N 4JYAN 2E5LN 3T1YN 4JI1N 4X66N 4DV4N 4DV5N 1N34N 2VQEN 1N33N 4DUYN 4LFCN 4GKJN 4X64N 4DV3N 3JAMd 4X62N 4B3MN 4JI2N 4K0KN 1XNRN 4X65N 1J5EN 2ZM6N 2UUBN 4DR5N 2UXDN 2UUCN 1XMON 4LFAN 4KHPN 1HNXN 4JI7N 2HHHN 3T1HN 1HNZN 5FLXd 4JI4N 2UXBN 4DR2N 4DV1N 1I94N 4JI0N 4GKKN 3J7AT 1N36N 2F4VN 4DV2N 3J80d 4YY3N 1N32N 4JI6N 4JI8N 4YHHN 1IBLN 5LMNN 2VQFN 2UU9N 4OX9N 4NXNN 4LF7N 4AQYN 1HNWN 4B3TN 1FJGN 4LF9N 1IBMN 4DR1N 3OTON 4NXMN 5BR8N 2UXCN 4DR3N 4JV5N 5IWAN 4DUZN 2UUAN 4DR6N 5LMUN 4LF8N 4DR7N 4LFBN 4JI3N 4DV7N 4JI5N 1HR0N 4DV0N 4DR4N 4B3RN
chains in the Genus database with same CATH superfamily
5A2Qd 4LF4N 4DV6N 4B3SN 1IBKN 1XNQN 3J81d 4LF5N 5IT9d 1XMQN 4LF6N 4JYAN 2E5LN 3T1YN 4JI1N 4X66N 4DV4N 4DV5N 1N34N 2VQEN 1N33N 4DUYN 4LFCN 4GKJN 4X64N 4DV3N 3JAMd 4X62N 4B3MN 4JI2N 4K0KN 1XNRN 4X65N 1J5EN 2ZM6N 2UUBN 4DR5N 2UXDN 2UUCN 1XMON 4LFAN 4KHPN 1HNXN 4JI7N 2HHHN 3T1HN 1HNZN 5FLXd 4JI4N 2UXBN 4DR2N 4DV1N 1I94N 4JI0N 4GKKN 3J7AT 1N36N 2F4VN 4DV2N 3J80d 4YY3N 1N32N 4JI6N 4JI8N 4YHHN 1IBLN 5LMNN 2VQFN 2UU9N 4OX9N 4NXNN 4LF7N 4AQYN 1HNWN 4B3TN 1FJGN 4LF9N 1IBMN 4DR1N 3OTON 4NXMN 5BR8N 2UXCN 4DR3N 4JV5N 5IWAN 4DUZN 2UUAN 4DR6N 5LMUN 4LF8N 4DR7N 4LFBN 4JI3N 4DV7N 4JI5N 1HR0N 4DV0N 4DR4N 4B3RN
chains in the Genus database with same CATH topology
5A2Qd 4LF4N 4DV6N 4B3SN 1IBKN 1XNQN 3J81d 4LF5N 5IT9d 1XMQN 4LF6N 4JYAN 2E5LN 3T1YN 4JI1N 4X66N 4DV4N 4DV5N 1N34N 2VQEN 1N33N 4DUYN 4LFCN 4GKJN 4X64N 4DV3N 3JAMd 4X62N 4B3MN 4JI2N 4K0KN 1XNRN 4X65N 1J5EN 2ZM6N 2UUBN 4DR5N 2UXDN 2UUCN 1XMON 4LFAN 4KHPN 1HNXN 4JI7N 2HHHN 3T1HN 1HNZN 5FLXd 4JI4N 2UXBN 4DR2N 4DV1N 1I94N 4JI0N 4GKKN 3J7AT 1N36N 2F4VN 4DV2N 3J80d 4YY3N 1N32N 4JI6N 4JI8N 4YHHN 1IBLN 5LMNN 2VQFN 2UU9N 4OX9N 4NXNN 4LF7N 4AQYN 1HNWN 4B3TN 1FJGN 4LF9N 1IBMN 4DR1N 3OTON 4NXMN 5BR8N 2UXCN 4DR3N 4JV5N 5IWAN 4DUZN 2UUAN 4DR6N 5LMUN 4LF8N 4DR7N 4LFBN 4JI3N 4DV7N 4JI5N 1HR0N 4DV0N 4DR4N 4B3RN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A2Q d;  4LF4 N;  4DV6 N;  4B3S N;  1IBK N;  1XNQ N;  3J81 d;  4LF5 N;  5IT9 d;  1XMQ N;  4LF6 N;  4JYA N;  2E5L N;  3T1Y N;  4JI1 N;  4X66 N;  4DV4 N;  4DV5 N;  1N34 N;  2VQE N;  1N33 N;  4DUY N;  4LFC N;  4GKJ N;  4X64 N;  4DV3 N;  3JAM d;  4X62 N;  4B3M N;  4JI2 N;  4K0K N;  1XNR N;  4X65 N;  1J5E N;  2ZM6 N;  2UUB N;  4DR5 N;  2UXD N;  2UUC N;  1XMO N;  4LFA N;  4KHP N;  1HNX N;  4JI7 N;  2HHH N;  3T1H N;  1HNZ N;  5FLX d;  4JI4 N;  2UXB N;  4DR2 N;  4DV1 N;  1I94 N;  4JI0 N;  4GKK N;  3J7A T;  1N36 N;  2F4V N;  4DV2 N;  3J80 d;  4YY3 N;  1N32 N;  4JI6 N;  4JI8 N;  4YHH N;  1IBL N;  5LMN N;  2VQF N;  2UU9 N;  4OX9 N;  4NXN N;  4LF7 N;  4AQY N;  1HNW N;  4B3T N;  1FJG N;  4LF9 N;  1IBM N;  4DR1 N;  3OTO N;  4NXM N;  5BR8 N;  2UXC N;  4DR3 N;  4JV5 N;  5IWA N;  4DUZ N;  2UUA N;  4DR6 N;  5LMU N;  4LF8 N;  4DR7 N;  4LFB N;  4JI3 N;  4DV7 N;  4JI5 N;  1HR0 N;  4DV0 N;  4DR4 N;  4B3R N; 
#chains in the Genus database with same CATH topology
 5A2Q d;  4LF4 N;  4DV6 N;  4B3S N;  1IBK N;  1XNQ N;  3J81 d;  4LF5 N;  5IT9 d;  1XMQ N;  4LF6 N;  4JYA N;  2E5L N;  3T1Y N;  4JI1 N;  4X66 N;  4DV4 N;  4DV5 N;  1N34 N;  2VQE N;  1N33 N;  4DUY N;  4LFC N;  4GKJ N;  4X64 N;  4DV3 N;  3JAM d;  4X62 N;  4B3M N;  4JI2 N;  4K0K N;  1XNR N;  4X65 N;  1J5E N;  2ZM6 N;  2UUB N;  4DR5 N;  2UXD N;  2UUC N;  1XMO N;  4LFA N;  4KHP N;  1HNX N;  4JI7 N;  2HHH N;  3T1H N;  1HNZ N;  5FLX d;  4JI4 N;  2UXB N;  4DR2 N;  4DV1 N;  1I94 N;  4JI0 N;  4GKK N;  3J7A T;  1N36 N;  2F4V N;  4DV2 N;  3J80 d;  4YY3 N;  1N32 N;  4JI6 N;  4JI8 N;  4YHH N;  1IBL N;  5LMN N;  2VQF N;  2UU9 N;  4OX9 N;  4NXN N;  4LF7 N;  4AQY N;  1HNW N;  4B3T N;  1FJG N;  4LF9 N;  1IBM N;  4DR1 N;  3OTO N;  4NXM N;  5BR8 N;  2UXC N;  4DR3 N;  4JV5 N;  5IWA N;  4DUZ N;  2UUA N;  4DR6 N;  5LMU N;  4LF8 N;  4DR7 N;  4LFB N;  4JI3 N;  4DV7 N;  4JI5 N;  1HR0 N;  4DV0 N;  4DR4 N;  4B3R N; 
#chains in the Genus database with same CATH homology
 5A2Q d;  4LF4 N;  4DV6 N;  4B3S N;  1IBK N;  1XNQ N;  3J81 d;  4LF5 N;  5IT9 d;  1XMQ N;  4LF6 N;  4JYA N;  2E5L N;  3T1Y N;  4JI1 N;  4X66 N;  4DV4 N;  4DV5 N;  1N34 N;  2VQE N;  1N33 N;  4DUY N;  4LFC N;  4GKJ N;  4X64 N;  4DV3 N;  3JAM d;  4X62 N;  4B3M N;  4JI2 N;  4K0K N;  1XNR N;  4X65 N;  1J5E N;  2ZM6 N;  2UUB N;  4DR5 N;  2UXD N;  2UUC N;  1XMO N;  4LFA N;  4KHP N;  1HNX N;  4JI7 N;  2HHH N;  3T1H N;  1HNZ N;  5FLX d;  4JI4 N;  2UXB N;  4DR2 N;  4DV1 N;  1I94 N;  4JI0 N;  4GKK N;  3J7A T;  1N36 N;  2F4V N;  4DV2 N;  3J80 d;  4YY3 N;  1N32 N;  4JI6 N;  4JI8 N;  4YHH N;  1IBL N;  5LMN N;  2VQF N;  2UU9 N;  4OX9 N;  4NXN N;  4LF7 N;  4AQY N;  1HNW N;  4B3T N;  1FJG N;  4LF9 N;  1IBM N;  4DR1 N;  3OTO N;  4NXM N;  5BR8 N;  2UXC N;  4DR3 N;  4JV5 N;  5IWA N;  4DUZ N;  2UUA N;  4DR6 N;  5LMU N;  4LF8 N;  4DR7 N;  4LFB N;  4JI3 N;  4DV7 N;  4JI5 N;  1HR0 N;  4DV0 N;  4DR4 N;  4B3R N; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...