5E6C | Genus

Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	78
structure length	78
Chain Sequence	PKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Dna binding protein/dna
source organism	Homo sapiens
publication title	Cryptic glucocorticoid receptor-binding sites pervade genomic NF-kappa B response elements. pubmed doi rcsb
molecule keywords	Glucocorticoid receptor
total genus	15
structure length	78
sequence length	78
chains with identical sequence	B
ec nomenclature
pdb deposition date	2015-10-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00105	zf-C4	Zinc finger, C4 type (two domains)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1; Chain A	Erythroid Transcription Factor GATA-1, subunit A	5e6cA00

3G6QA 1BY4A 1A6YA 3DZUD 2C7AA 3G9OA 3G9PA 1KB2A 5CBXA 5EMCA 5CBZA 7GATA 5KRBB 5E6DA 3G9JA 1HLZA 2NLLA 3G8XA 2HANB 4NQAB 4CN5A 5E6CA 2GDAA 2ENVA 4OORA 1R4RA 5CC1A 1LATA 4HN5A 3G97A 4CN3D 1YNWA 3VD6C 3FYLA 3DZUA 1LO1A 3VEKC 5E69A 1R4IA 3CBBA 3G8UA 2A66A 5E6BA 3G99A 2VUUI 2VUTI 1RXRA 1CITA 1DSZA 1GLUA 1HCPA 2NLLB 4TNTA 3GATA 3G6UA 1R0OB 3DZYD 2KAEA 5L0MA 5GATA 5EMPA 1LV3A 3DZYA 3G9MA 4IQRA 4CN3A 3E00D 3M9EA 1YNWB 3G9IA 3E00A 1R0NA 1GATA 4GATA 4ONDA 3DFXA 4HN6A 2VUSI 4CN7A 3G6RA 2FF0A 1DSZB 6GATA 4OV7A 1GA5A 1RGDA 4OLNA 5CBYA 1R4OA 4TMAI 4HC7A 5EMQA 1KB6A 3G6TA 1HCQA 4AA6A 1GDCA 5E6AA 4CN2C 5CC0A 2M9WA 2HANA 1GAUA 1HRAA 4HCAA 1KB4A 4HC9A 3G6PA 2GATA 1GNFA 1R0NB 2EBLA 1R0OA 3DFVC
chains in the Genus database with same CATH superfamily

3G6QA 1BY4A 1A6YA 3DZUD 2C7AA 2DS5A 3G9OA 3G9PA 1KB2A 5CBXA 5EMCA 5CBZA 7GATA 5KRBB 5E6DA 3G9JA 1HLZA 2NLLA 3G8XA 2HANB 4NQAB 4CN5A 5E6CA 2GDAA 2ENVA 4OORA 1R4RA 5CC1A 1LATA 4HN5A 3G97A 4CN3D 1YNWA 3VD6C 3G27A 3FYLA 3DZUA 1LO1A 3VEKC 5E69A 1R4IA 3CBBA 3G8UA 2A66A 5E6BA 3G99A 2VUUI 2VUTI 1RXRA 1CITA 1DSZA 1GLUA 1HCPA 2NLLB 4TNTA 3GATA 3G6UA 1R0OB 3DZYD 2KAEA 5L0MA 5GATA 5EMPA 1LV3A 3DZYA 3G9MA 4IQRA 4CN3A 3E00D 3M9EA 1YNWB 3G9IA 3E00A 1R0NA 1GATA 4GATA 4ONDA 3DFXA 4HN6A 2VUSI 4CN7A 3G6RA 2FF0A 1DSZB 6GATA 4OV7A 1GA5A 1RGDA 4OLNA 5CBYA 1R4OA 4TMAI 4HC7A 5EMQA 1KB6A 3G6TA 1HCQA 4AA6A 1GDCA 5E6AA 4CN2C 5CC0A 2M9WA 2HANA 2DS8A 1GAUA 1HRAA 4HCAA 1KB4A 4HC9A 3G6PA 2GATA 1GNFA 2DS6A 2EBLA 1R0NB 1R0OA 3DFVC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3G6Q A;  1BY4 A;  1A6Y A;  3DZU D;  2C7A A;  3G9O A;  3G9P A;  1KB2 A;  5CBX A;  5EMC A;  5CBZ A;  7GAT A;  5KRB B;  5E6D A;  3G9J A;  1HLZ A;  2NLL A;  3G8X A;  2HAN B;  4NQA B;  4CN5 A;  5E6C A;  2GDA A;  2ENV A;  4OOR A;  1R4R A;  5CC1 A;  1LAT A;  4HN5 A;  3G97 A;  4CN3 D;  1YNW A;  3VD6 C;  3FYL A;  3DZU A;  1LO1 A;  3VEK C;  5E69 A;  1R4I A;  3CBB A;  3G8U A;  2A66 A;  5E6B A;  3G99 A;  2VUU I;  2VUT I;  1RXR A;  1CIT A;  1DSZ A;  1GLU A;  1HCP A;  2NLL B;  4TNT A;  3GAT A;  3G6U A;  1R0O B;  3DZY D;  2KAE A;  5L0M A;  5GAT A;  5EMP A;  1LV3 A;  3DZY A;  3G9M A;  4IQR A;  4CN3 A;  3E00 D;  3M9E A;  1YNW B;  3G9I A;  3E00 A;  1R0N A;  1GAT A;  4GAT A;  4OND A;  3DFX A;  4HN6 A;  2VUS I;  4CN7 A;  3G6R A;  2FF0 A;  1DSZ B;  6GAT A;  4OV7 A;  1GA5 A;  1RGD A;  4OLN A;  5CBY A;  1R4O A;  4TMA I;  4HC7 A;  5EMQ A;  1KB6 A;  3G6T A;  1HCQ A;  4AA6 A;  1GDC A;  5E6A A;  4CN2 C;  5CC0 A;  2M9W A;  2HAN A;  1GAU A;  1HRA A;  4HCA A;  1KB4 A;  4HC9 A;  3G6P A;  2GAT A;  1GNF A;  1R0N B;  2EBL A;  1R0O A;  3DFV C; 
#chains in the Genus database with same CATH topology
 3G6Q A;  1BY4 A;  1A6Y A;  3DZU D;  2C7A A;  2DS5 A;  3G9O A;  3G9P A;  1KB2 A;  5CBX A;  5EMC A;  5CBZ A;  7GAT A;  5KRB B;  5E6D A;  3G9J A;  1HLZ A;  2NLL A;  3G8X A;  2HAN B;  4NQA B;  4CN5 A;  5E6C A;  2GDA A;  2ENV A;  4OOR A;  1R4R A;  5CC1 A;  1LAT A;  4HN5 A;  3G97 A;  4CN3 D;  1YNW A;  3VD6 C;  3G27 A;  3FYL A;  3DZU A;  1LO1 A;  3VEK C;  5E69 A;  1R4I A;  3CBB A;  3G8U A;  2A66 A;  5E6B A;  3G99 A;  2VUU I;  2VUT I;  1RXR A;  1CIT A;  1DSZ A;  1GLU A;  1HCP A;  2NLL B;  4TNT A;  3GAT A;  3G6U A;  1R0O B;  3DZY D;  2KAE A;  5L0M A;  5GAT A;  5EMP A;  1LV3 A;  3DZY A;  3G9M A;  4IQR A;  4CN3 A;  3E00 D;  3M9E A;  1YNW B;  3G9I A;  3E00 A;  1R0N A;  1GAT A;  4GAT A;  4OND A;  3DFX A;  4HN6 A;  2VUS I;  4CN7 A;  3G6R A;  2FF0 A;  1DSZ B;  6GAT A;  4OV7 A;  1GA5 A;  1RGD A;  4OLN A;  5CBY A;  1R4O A;  4TMA I;  4HC7 A;  5EMQ A;  1KB6 A;  3G6T A;  1HCQ A;  4AA6 A;  1GDC A;  5E6A A;  4CN2 C;  5CC0 A;  2M9W A;  2HAN A;  2DS8 A;  1GAU A;  1HRA A;  4HCA A;  1KB4 A;  4HC9 A;  3G6P A;  2GAT A;  1GNF A;  2DS6 A;  2EBL A;  1R0N B;  1R0O A;  3DFV C; 
#chains in the Genus database with same CATH homology
 3G6Q A;  1BY4 A;  1A6Y A;  3DZU D;  2C7A A;  3G9O A;  3G9P A;  1KB2 A;  5CBX A;  5EMC A;  5CBZ A;  7GAT A;  5KRB B;  5E6D A;  3G9J A;  1HLZ A;  2NLL A;  3G8X A;  2HAN B;  4NQA B;  4CN5 A;  5E6C A;  2GDA A;  2ENV A;  4OOR A;  1R4R A;  5CC1 A;  1LAT A;  4HN5 A;  3G97 A;  4CN3 D;  1YNW A;  3VD6 C;  3FYL A;  3DZU A;  1LO1 A;  3VEK C;  5E69 A;  1R4I A;  3CBB A;  3G8U A;  2A66 A;  5E6B A;  3G99 A;  2VUU I;  2VUT I;  1RXR A;  1CIT A;  1DSZ A;  1GLU A;  1HCP A;  2NLL B;  4TNT A;  3GAT A;  3G6U A;  1R0O B;  3DZY D;  2KAE A;  5L0M A;  5GAT A;  5EMP A;  1LV3 A;  3DZY A;  3G9M A;  4IQR A;  4CN3 A;  3E00 D;  3M9E A;  1YNW B;  3G9I A;  3E00 A;  1R0N A;  1GAT A;  4GAT A;  4OND A;  3DFX A;  4HN6 A;  2VUS I;  4CN7 A;  3G6R A;  2FF0 A;  1DSZ B;  6GAT A;  4OV7 A;  1GA5 A;  1RGD A;  4OLN A;  5CBY A;  1R4O A;  4TMA I;  4HC7 A;  5EMQ A;  1KB6 A;  3G6T A;  1HCQ A;  4AA6 A;  1GDC A;  5E6A A;  4CN2 C;  5CC0 A;  2M9W A;  2HAN A;  1GAU A;  1HRA A;  4HCA A;  1KB4 A;  4HC9 A;  3G6P A;  2GAT A;  1GNF A;  1R0N B;  2EBL A;  1R0O A;  3DFV C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5E6CA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations