The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
156
|
structure length |
151
|
Chain Sequence |
YTYGKPFAVMYIPRLGFTWNKPVLEGTGTEVLKKGLGHYANTARLGQKGNFAVAGHRRTYGDPFKDFPKLRHGDEVVLTDGTTWFTYVIDTGPYKTVPTDVEVIDPVPRKSGYEREGRYLTLTTEPSHRLIVWAHLDSTQPVEAGKPEALR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and specificity of a new class of Ca2+-independent housekeeping sortase from Streptomyces avermitilis provide insights into its non-canonical substrate preference.
pubmed doi rcsb |
| molecule keywords |
sortase
|
| molecule tags |
Hydrolase
|
| source organism |
Streptomyces avermitilis (strain atcc 31267 / dsm 46492 / jcm 5070 / nbrc 14893
|
| total genus |
38
|
| structure length |
151
|
| sequence length |
156
|
| ec nomenclature | |
| pdb deposition date | 2016-07-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04203 | Sortase | Sortase domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Sortase; Chain: A; | Sortase |
#chains in the Genus database with same CATH superfamily 1IJA A; 2LN7 A; 1T2O A; 2KW8 A; 2OQZ A; 3G69 A; 3FN6 A; 4O8L B; 4O8L A; 5CUW A; 3RBK A; 4UX7 A; 4G1J A; 1QXA A; 3O0P A; 1QX6 A; 4G1H A; 2W1K A; 2W1J A; 3RBI A; 4O8T A; 3TB7 A; 2MLM A; 3RCC A; 1T2W A; 4Y4Q A; 5B23 A; 2XWG A; 3FN7 A; 3FN5 A; 4LFD A; 2KID A; 1QWZ A; 3RBJ A; 1NG5 A; 5GO5 A; 2WTS A; 5GYJ A; 5JCV A; 3TBE A; 1T2P A; 2OQW A; 2RUI A; 4D70 A; 5K9A A; 3RE9 A; 3G66 A; 4D7W A; 1RZ2 A; 3PSQ A; #chains in the Genus database with same CATH topology 1IJA A; 2LN7 A; 1T2O A; 2KW8 A; 2OQZ A; 3G69 A; 3FN6 A; 4O8L B; 4O8L A; 5CUW A; 3RBK A; 4UX7 A; 4G1J A; 1QXA A; 3O0P A; 1QX6 A; 4G1H A; 2W1K A; 2W1J A; 3RBI A; 4O8T A; 3TB7 A; 2MLM A; 3RCC A; 1T2W A; 4Y4Q A; 5B23 A; 2XWG A; 3FN7 A; 3FN5 A; 4LFD A; 2KID A; 1QWZ A; 3RBJ A; 1NG5 A; 5GO5 A; 2WTS A; 5GYJ A; 5JCV A; 3TBE A; 1T2P A; 2OQW A; 2RUI A; 4D70 A; 5K9A A; 3RE9 A; 3G66 A; 4D7W A; 1RZ2 A; 3PSQ A; #chains in the Genus database with same CATH homology 1IJA A; 2LN7 A; 1T2O A; 2KW8 A; 2OQZ A; 3G69 A; 3FN6 A; 4O8L B; 4O8L A; 5CUW A; 3RBK A; 4UX7 A; 4G1J A; 1QXA A; 3O0P A; 1QX6 A; 4G1H A; 2W1K A; 2W1J A; 3RBI A; 4O8T A; 3TB7 A; 2MLM A; 3RCC A; 1T2W A; 4Y4Q A; 5B23 A; 2XWG A; 3FN7 A; 3FN5 A; 4LFD A; 2KID A; 1QWZ A; 3RBJ A; 1NG5 A; 5GO5 A; 2WTS A; 5GYJ A; 5JCV A; 3TBE A; 1T2P A; 2OQW A; 2RUI A; 4D70 A; 5K9A A; 3RE9 A; 3G66 A; 4D7W A; 1RZ2 A; 3PSQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
