5JEMC

Complex of irf-3 with cbp
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
42
structure length
42
Chain Sequence
SALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for concerted recruitment and activation of IRF-3 by innate immune adaptor proteins.
pubmed doi rcsb
molecule tags Immune system
source organism Homo sapiens
molecule keywords Interferon regulatory factor 3
total genus 13
structure length 42
sequence length 42
chains with identical sequence D, F, H
ec nomenclature ec 2.3.1.48: Histone acetyltransferase.
pdb deposition date 2016-04-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1630.10 Mainly Alpha Orthogonal Bundle Creb-binding Protein; Chain: A Nuclear receptor coactivator, CREB-bp-like, interlocking domain 5jemC00
1JJSA 2C52A 2KKJA 2L14A 1KBHB 1ZOQC 5JEMC
chains in the Genus database with same CATH superfamily
1JJSA 2C52A 2KKJA 2L14A 1KBHB 1ZOQC 5JEMC
chains in the Genus database with same CATH topology
1JJSA 2C52A 2KKJA 2L14A 1KBHB 1ZOQC 5JEMC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JJS A;  2C52 A;  2KKJ A;  2L14 A;  1KBH B;  1ZOQ C;  5JEM C; 
#chains in the Genus database with same CATH topology
 1JJS A;  2C52 A;  2KKJ A;  2L14 A;  1KBH B;  1ZOQ C;  5JEM C; 
#chains in the Genus database with same CATH homology
 1JJS A;  2C52 A;  2KKJ A;  2L14 A;  1KBH B;  1ZOQ C;  5JEM C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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